Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G18450 - ( SDH1-2 succinate dehydrogenase )
97 Proteins interacs with AT2G18450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0534
| Class C:mitochondrion | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT5G63400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0287
| Class C:mitochondrion | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3064
| Class C:mitochondrion | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4000
| Class C:mitochondrion | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4357
| Class C:mitochondrion | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G50940 | Predictedsynthetic growth defect | FSW = 0.0483
| Class C:mitochondrion | ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA) FAD BINDING / ELECTRON CARRIER |
AT4G28060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0889
| Class C:mitochondrion | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT5G66760 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0216
| Class C:mitochondrion | SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.1928
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3964
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT5G19320 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT2G20450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1249
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.1122
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G13080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2180
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.4841
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT4G01370 | PredictedAffinity Capture-Western | FSW = 0.0092
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.4375
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT2G45960 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT2G22780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2139
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.4334
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G16950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2091
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT1G21640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4001
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.3355
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.1426
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT4G30950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1233
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT5G14760 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0509
| Unknown | AO (L-ASPARTATE OXIDASE) L-ASPARTATE OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE |
AT1G80030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1361
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G20010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4139
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.1036
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.2759
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1005
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT3G09740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3163
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4491
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.3440
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.1152
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3502
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4500
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G59740 | PredictedAffinity Capture-MS | FSW = 0.0211
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G35310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4772
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.1505
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT1G74060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1754
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2612
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G47620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0286
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G23460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3025
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.2342
| Unknown | BINDING |
AT5G08335 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT5G47720 | PredictedAffinity Capture-MS | FSW = 0.0781
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.2317
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT4G16420 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G12530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3546
| Unknown | PSF2 |
AT1G20920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2591
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0758
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1234
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4259
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4272
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3767
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT1G25155 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G44180 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2693
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3319
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G66240 | PredictedAffinity Capture-MS | FSW = 0.0397
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.0952
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G36060 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3383
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.2740
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G10130 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G16440 | PredictedAffinity Capture-MS | FSW = 0.0929
| Unknown | FERREDOXIN HYDROGENASE |
AT5G01430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0412
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G06620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0718
| Unknown | SDG38 (SET DOMAIN PROTEIN 38) |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2991
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.1321
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G40530 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4507
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0699
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2875
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2523
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1962
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0741
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.4160
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.0771
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.2400
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G47940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2511
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0937
| Unknown | HISTONE H4 |
AT3G62770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1267
| Unknown | ATATG18A |
AT4G11330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2250
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G36800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4551
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT4G39330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3417
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.4470
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G06600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0655
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1454
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.0728
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G37850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3630
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G41190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1732
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4713
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G03240 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0369
| Unknown | FH (FRATAXIN HOMOLOG) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454