Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18540 - ( 60S ribosomal protein L6 (RPL6A) )

65 Proteins interacs with AT1G18540
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.3170

Class C:

plastid

plasma membrane

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G36160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5490

Class C:

plastid

plasma membrane

40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT3G02090

Predicted

Affinity Capture-MS

FSW = 0.0134

Class C:

plastid

MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE
AT3G20390

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4362

Class C:

plastid

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT2G22780

Predicted

Affinity Capture-MS

FSW = 0.1699

Class C:

plastid

PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G24400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3689

Class C:

plastid

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT2G31170

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3919

Class C:

plastid

SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G21640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4362

Class C:

plastid

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G49010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0708

Class C:

plasma membrane

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G12580

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2990

Class C:

plasma membrane

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT5G20010

Predicted

Affinity Capture-MS

FSW = 0.5054

Class C:

plasma membrane

RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G61430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4830

Class C:

plasma membrane

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G28950

Predicted

Affinity Capture-MS

FSW = 0.1355

Class C:

plasma membrane

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT1G55690

Predicted

Affinity Capture-MS

FSW = 0.1836

Class C:

plasma membrane

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G63290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6141

Class C:

plasma membrane

RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.3972

Class C:

plasma membrane

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT1G74050

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.0833

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L6 (RPL6C)
AT1G20760

Predicted

Affinity Capture-MS

FSW = 0.4620

Class C:

plasma membrane

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT4G11380

Predicted

Affinity Capture-MS

FSW = 0.0104

Class C:

plasma membrane

BETA-ADAPTIN PUTATIVE
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.2036

Class C:

plasma membrane

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT4G35310

Predicted

Affinity Capture-MS

FSW = 0.5016

Class C:

plasma membrane

CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G13080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2393

Unknown

ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT1G74060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.4135

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G26600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2802

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT1G72440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0424

Unknown

EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G54910

Predicted

Affinity Capture-MS

FSW = 0.0395

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G23460

Predicted

Affinity Capture-MS

FSW = 0.3615

Unknown

XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT2G18450

Predicted

Affinity Capture-MS

FSW = 0.4375

Unknown

SDH1-2 SUCCINATE DEHYDROGENASE
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.0706

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G14580

Predicted

Synthetic Lethality

FSW = 0.0185

Unknown

ATPRB1
AT4G17620

Predicted

Affinity Capture-MS

FSW = 0.0141

Unknown

GLYCINE-RICH PROTEIN
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.2940

Unknown

PSF2
AT3G54820

Predicted

Affinity Capture-MS

FSW = 0.0195

Unknown

PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT5G51660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0352

Unknown

CPSF160 NUCLEIC ACID BINDING
AT1G09230

Predicted

two hybrid

FSW = 0.0508

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G16980

Predicted

two hybrid

FSW = 0.0142

Unknown

TETRACYCLINE TRANSPORTER
AT1G15440

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.0330

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G54290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3416

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.3971

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G16090

Predicted

Affinity Capture-MS

FSW = 0.5845

Unknown

ZINC FINGER PROTEIN-RELATED
AT2G16740

Predicted

Affinity Capture-MS

FSW = 0.2964

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.2340

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT4G11330

Predicted

Affinity Capture-MS

FSW = 0.2289

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G36800

Predicted

Affinity Capture-MS

FSW = 0.5776

Unknown

RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE
AT5G06420

Predicted

Affinity Capture-MS

FSW = 0.4788

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.3319

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G24410

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.1257

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G37850

Predicted

Affinity Capture-MS

FSW = 0.4906

Unknown

SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE
AT5G41190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0882

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4218

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2594

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT2G37540

Predicted

Affinity Capture-MS

FSW = 0.4503

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G44065

Predicted

Affinity Capture-MS

FSW = 0.0571

Unknown

RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT3G47940

Predicted

Affinity Capture-MS

FSW = 0.2731

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G49880

Predicted

Affinity Capture-MS

FSW = 0.0183

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0492

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G29140

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

MATE EFFLUX PROTEIN-RELATED
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.2285

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.3853

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT1G03530

Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT4G17410

Predicted

Affinity Capture-MS

FSW = 0.0671

Unknown

ZINC ION BINDING
AT2G21440

Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G17760

Predicted

Affinity Capture-MS

FSW = 0.0479

Unknown

CSTF77 PROTEIN BINDING
AT1G13160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0100

Unknown

SDA1 FAMILY PROTEIN
AT3G54470

Predicted

two hybrid

FSW = 0.0248

Unknown

URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454