Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18540 - ( 60S ribosomal protein L6 (RPL6A) )
65 Proteins interacs with AT1G18540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.3170
| Class C:plastidplasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5490
| Class C:plastidplasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G02090 | PredictedAffinity Capture-MS | FSW = 0.0134
| Class C:plastid | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4362
| Class C:plastid | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT2G22780 | PredictedAffinity Capture-MS | FSW = 0.1699
| Class C:plastid | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3689
| Class C:plastid | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3919
| Class C:plastid | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G21640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4362
| Class C:plastid | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0708
| Class C:plasma membrane | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2990
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.5054
| Class C:plasma membrane | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4830
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.1355
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT1G55690 | PredictedAffinity Capture-MS | FSW = 0.1836
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6141
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.3972
| Class C:plasma membrane | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT1G74050 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.0833
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6C) |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.4620
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G11380 | PredictedAffinity Capture-MS | FSW = 0.0104
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2036
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.5016
| Class C:plasma membrane | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G13080 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2393
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT1G74060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.4135
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2802
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G72440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0424
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT5G54910 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G23460 | PredictedAffinity Capture-MS | FSW = 0.3615
| Unknown | XLG1 (EXTRA-LARGE G-PROTEIN 1) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.4375
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.0706
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0185
| Unknown | ATPRB1 |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | GLYCINE-RICH PROTEIN |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.2940
| Unknown | PSF2 |
AT3G54820 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT5G51660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0352
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT1G09230 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G16980 | Predictedtwo hybrid | FSW = 0.0142
| Unknown | TETRACYCLINE TRANSPORTER |
AT1G15440 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0330
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3416
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.3971
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.5845
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2964
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.2340
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.2289
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.5776
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.4788
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.3319
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G24410 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1257
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.4906
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G41190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0882
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4218
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2594
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.4503
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G44065 | PredictedAffinity Capture-MS | FSW = 0.0571
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.2731
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0492
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G29140 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | MATE EFFLUX PROTEIN-RELATED |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2285
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.3853
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT4G17410 | PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | ZINC ION BINDING |
AT2G21440 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G17760 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | CSTF77 PROTEIN BINDING |
AT1G13160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0100
| Unknown | SDA1 FAMILY PROTEIN |
AT3G54470 | Predictedtwo hybrid | FSW = 0.0248
| Unknown | URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454