Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54820 - ( PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) water channel )
42 Proteins interacs with AT3G54820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G26520 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5416
| Unknown | TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL |
AT3G16240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4024
| Unknown | DELTA-TIP AMMONIA TRANSPORTER/ METHYLAMMONIUM TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL |
AT2G37170 | PredictedPhylogenetic profile method | FSW = 0.6129
| Unknown | PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) WATER CHANNEL |
AT1G11260 | PredictedAffinity Capture-MS | FSW = 0.0397
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G35100 | PredictedPhylogenetic profile method | FSW = 0.6194
| Unknown | PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) WATER CHANNEL |
AT2G39010 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6129
| Unknown | PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) WATER CHANNEL |
AT2G25810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5311
| Unknown | TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL |
AT5G55630 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1931
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT2G36830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5681
| Unknown | GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G59280 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.1416
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT3G53420 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5176
| Unknown | PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT1G01620 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4456
| Unknown | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
AT2G45960 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3235
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G62880 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0523
| Unknown | ARAC10 GTP BINDING |
AT3G61430 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2419
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT3G13560 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.1195
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G36380 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defectAffinity Capture-MS | FSW = 0.1935
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G00430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5906
| Unknown | PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL |
AT5G60660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5823
| Unknown | PIP24 (PLASMA MEMBRANE INTRINSIC PROTEIN 24) WATER CHANNEL |
AT4G23400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6349
| Unknown | PIP15 (PLASMA MEMBRANE INTRINSIC PROTEIN 15) WATER CHANNEL |
AT2G37180 | PredictedPhylogenetic profile method | FSW = 0.5667
| Unknown | RD28 (RESPONSIVE TO DESICCATION 28) WATER CHANNEL |
AT2G16850 | PredictedPhylogenetic profile method | FSW = 0.5404
| Unknown | PIP28 (PLASMA MEMBRANE INTRINSIC PROTEIN 28) WATER CHANNEL |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0623
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0426
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G00520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.2874
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT1G02680 | PredictedAffinity Capture-MS | FSW = 0.0386
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G07470 | Predictedsynthetic growth defect | FSW = 0.0534
| Unknown | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0106
| Unknown | ATPRB1 |
AT1G17810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2988
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G47440 | PredictedPhylogenetic profile method | FSW = 0.5416
| Unknown | TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL |
AT1G31885 | PredictedPhylogenetic profile method | FSW = 0.3735
| Unknown | TRANSPORTER |
AT1G18100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationsynthetic growth defectSynthetic Lethality | FSW = 0.1222
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0670
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G19730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complexco-fractionationCo-fractionationinterologs mapping | FSW = 0.0854
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G80460 | PredictedAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.2697
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT1G63370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0865
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT5G59040 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | COPT3 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G39640 | Predictedsynthetic growth defect | FSW = 0.0222
| Unknown | GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454