Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59280 - ( TXR1 (THAXTOMIN A RESISTANT 1) )
34 Proteins interacs with AT3G59280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G11870 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:mitochondrion | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT3G54660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1098
| Class C:mitochondrion | GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE |
AT2G39290 | PredictedSynthetic Rescue | FSW = 0.0180
| Class C:mitochondrion | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT5G61880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1053
| Class C:mitochondrion | SIGNALING MOLECULE-RELATED |
AT2G20510 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationReconstituted Complex | FSW = 0.0864
| Class C:mitochondrion | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G17530 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1171
| Class C:mitochondrion | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G55900 | PredictedAffinity Capture-Western | FSW = 0.1389
| Class C:mitochondrion | TIM50 |
AT1G20350 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.2195
| Class C:mitochondrion | ATTIM17-1 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER |
AT3G62870 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0187
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G09820 | PredictedAffinity Capture-MS | FSW = 0.0816
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G51070 | PredictedSynthetic Rescue | FSW = 0.1389
| Unknown | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10070 | PredictedAffinity Capture-WesternReconstituted Complexinterologs mapping | FSW = 0.0120
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G47370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0408
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT2G18180 | PredictedPhenotypic Suppression | FSW = 0.1368
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT2G36380 | Predictedinterologs mappingPhenotypic SuppressionSynthetic Rescue | FSW = 0.1609
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G46900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0898
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT1G53750 | PredictedPhenotypic Suppressioninterologs mappingPhenotypic SuppressionSynthetic Rescue | FSW = 0.0736
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT4G00520 | PredictedPhenotypic Suppression | FSW = 0.1267
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G54820 | PredictedSynthetic Rescuesynthetic growth defect | FSW = 0.1416
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT1G18100 | Predictedinterologs mappinginterologs mappinginterologs mappingPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1985
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT1G19730 | Predictedtwo hybrid | FSW = 0.1009
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0488
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G10920 | PredictedSynthetic Lethality | FSW = 0.0390
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT1G31170 | Predictedinterologs mappingtwo hybridtwo hybridReconstituted ComplexAffinity Capture-WesternReconstituted Complexinterologs mapping | FSW = 0.0344
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G67300 | PredictedSynthetic RescuePhenotypic Enhancement | FSW = 0.0833
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT1G79210 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0291
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G20410 | PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G27920 | Predictedinterologs mapping | FSW = 0.0316
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G35795 | PredictedReconstituted Complexinterologs mappingCo-purificationAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.1951
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G55160 | PredictedSynthetic Rescue | FSW = 0.0677
| Unknown | EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 4 ANTHESIS F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S HEAT (INTERPROIPR000357) HAS 244 BLAST HITS TO 237 PROTEINS IN 110 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 124 FUNGI - 72 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT4G29910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0827
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G31770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0864
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454