Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59280 - ( TXR1 (THAXTOMIN A RESISTANT 1) )

34 Proteins interacs with AT3G59280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G11870

Predicted

Affinity Capture-MS

FSW = 0.0085

Class C:

mitochondrion

SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT3G54660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1098

Class C:

mitochondrion

GR (GLUTATHIONE REDUCTASE) ATP BINDING / GLUTATHIONE-DISULFIDE REDUCTASE
AT2G39290

Predicted

Synthetic Rescue

FSW = 0.0180

Class C:

mitochondrion

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT5G61880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1053

Class C:

mitochondrion

SIGNALING MOLECULE-RELATED
AT2G20510

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

Reconstituted Complex

FSW = 0.0864

Class C:

mitochondrion

ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT1G17530

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.1171

Class C:

mitochondrion

ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT1G55900

Predicted

Affinity Capture-Western

FSW = 0.1389

Class C:

mitochondrion

TIM50
AT1G20350

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.2195

Class C:

mitochondrion

ATTIM17-1 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER
AT3G62870

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0187

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G09820

Predicted

Affinity Capture-MS

FSW = 0.0816

Unknown

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT5G51070

Predicted

Synthetic Rescue

FSW = 0.1389

Unknown

ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G10070

Predicted

Affinity Capture-Western

Reconstituted Complex

interologs mapping

FSW = 0.0120

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT3G47370

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0408

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT2G18180

Predicted

Phenotypic Suppression

FSW = 0.1368

Unknown

SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE
AT2G36380

Predicted

interologs mapping

Phenotypic Suppression

Synthetic Rescue

FSW = 0.1609

Unknown

PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G46900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0898

Unknown

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT1G53750

Predicted

Phenotypic Suppression

interologs mapping

Phenotypic Suppression

Synthetic Rescue

FSW = 0.0736

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT4G00520

Predicted

Phenotypic Suppression

FSW = 0.1267

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT1G74060

Predicted

Affinity Capture-MS

FSW = 0.0087

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G54820

Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.1416

Unknown

PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT1G18100

Predicted

interologs mapping

interologs mapping

interologs mapping

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.1985

Unknown

E12A11 PHOSPHATIDYLETHANOLAMINE BINDING
AT1G19730

Predicted

two hybrid

FSW = 0.1009

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0488

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT4G10920

Predicted

Synthetic Lethality

FSW = 0.0390

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G31170

Predicted

interologs mapping

two hybrid

two hybrid

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

interologs mapping

FSW = 0.0344

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G67300

Predicted

Synthetic Rescue

Phenotypic Enhancement

FSW = 0.0833

Unknown

HEXOSE TRANSPORTER PUTATIVE
AT1G79210

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0291

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT2G20410

Predicted

Affinity Capture-MS

FSW = 0.0805

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G27920

Predicted

interologs mapping

FSW = 0.0316

Unknown

SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G35795

Predicted

Reconstituted Complex

interologs mapping

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

Synthetic Lethality

FSW = 0.1951

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT3G55160

Predicted

Synthetic Rescue

FSW = 0.0677

Unknown

EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 4 ANTHESIS F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S HEAT (INTERPROIPR000357) HAS 244 BLAST HITS TO 237 PROTEINS IN 110 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 124 FUNGI - 72 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT4G29910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0827

Unknown

ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT4G31770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0864

Unknown

CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454