AtPIN will be upgraded. Please send your suggestions here

AT1G20350 - ( ATTIM17-1 P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter )

9 Proteins interacs with AT1G20350

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G09590	Predicted interaction prediction Affinity Capture-Western Affinity Capture-Western Synthetic Lethality interologs mapping interologs mapping	FSW = 0.0289	Class C: mitochondrion	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G37910	Predicted Affinity Capture-Western Affinity Capture-Western interologs mapping Synthetic Lethality	FSW = 0.0505	Class C: mitochondrion	MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT3G59280	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Co-purification	FSW = 0.2195	Class C: mitochondrion	TXR1 (THAXTOMIN A RESISTANT 1)
AT1G17530	Predicted interaction prediction Reconstituted Complex interologs mapping interologs mapping Co-purification Co-purification co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS interologs mapping interologs mapping Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Co-purification Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Synthetic Lethality Affinity Capture-MS Co-purification co-fractionation Co-fractionation interologs mapping interaction prediction	FSW = 0.4196	Class C: mitochondrion	ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT2G37410	Predicted Phylogenetic profile method Co-expression	FSW = 0.1262	Class C: mitochondrion	ATTIM17-2 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER
AT2G20510	Predicted co-fractionation Co-fractionation co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation co-fractionation Co-fractionation Synthetic Lethality Affinity Capture-Western	FSW = 0.2586	Class C: mitochondrion	ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT1G55900	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western	FSW = 0.4737	Class C: mitochondrion	TIM50
AT1G50400	Predicted interaction prediction	FSW = 0.2622	Class C: mitochondrion	PORIN FAMILY PROTEIN
AT2G35795	Predicted Reconstituted Complex interologs mapping Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western	FSW = 0.3618	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G20350 - ( ATTIM17-1 P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Downloads

Fasta sequences:

Quick help

FSW

C3

PEP

How to cite