Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G20510 - ( ATTIM44-1 protein-transmembrane transporting ATPase )
46 Proteins interacs with AT2G20510| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G15090
   | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2404
| Class C:mitochondrion | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
| AT3G20000
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1210
| Class C:mitochondrion | TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL |
| AT5G09590
| Predictedinteraction predictionAffinity Capture-MSinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybridAffinity Capture-MSCo-purificationSynthetic Lethalityinterologs mapping | FSW = 0.0536
| Class C:mitochondrion | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT4G37910
| PredictedReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationReconstituted ComplexSynthetic Lethalitytwo hybrid | FSW = 0.0204
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
| AT3G59280
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationReconstituted Complex | FSW = 0.0864
| Class C:mitochondrion | TXR1 (THAXTOMIN A RESISTANT 1) |
| AT2G17270
| PredictedSynthetic Lethality | FSW = 0.0427
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT2G41380
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0815
| Class C:mitochondrion | EMBRYO-ABUNDANT PROTEIN-RELATED |
| AT5G11690
| Predictedin vitroAffinity Capture-MS | FSW = 0.0186
| Class C:mitochondrion | ATTIM17-3 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER |
| AT1G17530
| Predictedinteraction predictionReconstituted ComplexCo-purificationCo-purificationco-fractionationCo-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-MSReconstituted ComplexCo-purificationinterologs mappinginteraction prediction | FSW = 0.1753
| Class C:mitochondrion | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT1G55900
| PredictedAffinity Capture-Western | FSW = 0.1068
| Class C:mitochondrion | TIM50 |
| AT1G20350
| Predictedco-fractionationCo-fractionationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationco-fractionationCo-fractionationSynthetic LethalityAffinity Capture-Western | FSW = 0.2586
| Class C:mitochondrion | ATTIM17-1 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER |
| AT3G08710
| PredictedSynthetic Lethality | FSW = 0.0435
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT1G15880
| PredictedSynthetic Lethality | FSW = 0.0450
| Unknown | GOS11 (GOLGI SNARE 11) SNARE BINDING |
| AT4G29260
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1672
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
| AT1G72370
| PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G36620
| PredictedAffinity Capture-MS | FSW = 0.0769
| Unknown | RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G55920
| PredictedSynthetic Lethality | FSW = 0.0656
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT5G51820
| PredictedSynthetic Lethality | FSW = 0.0584
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
| AT3G04770
| PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G12370
| PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
| AT1G79920
| PredictedReconstituted Complex | FSW = 0.0099
| Unknown | ATP BINDING |
| AT2G44860
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.1043
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT3G13445
| PredictedSynthetic Lethality | FSW = 0.0128
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT3G53020
| PredictedAffinity Capture-MS | FSW = 0.0339
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G36170 | PredictedSynthetic Lethality | FSW = 0.0192
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
| AT5G60980
| PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G66590
| PredictedSynthetic Lethality | FSW = 0.0604
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT1G67490
| Predictedinteraction prediction | FSW = 0.0212
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
| AT4G10920
| PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
| AT4G11330
| Predictedtwo hybrid | FSW = 0.0034
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT1G25500
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1662
| Unknown | CHOLINE TRANSPORTER-RELATED |
| AT1G52500
| PredictedSynthetic Lethality | FSW = 0.0432
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
| AT1G60680
| PredictedSynthetic Lethality | FSW = 0.0465
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT1G71800
| PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | CLEAVAGE STIMULATION FACTOR PUTATIVE |
| AT2G35795
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1076
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT4G26780
| PredictedReconstituted ComplexCo-purificationAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.0427
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
| AT5G26250
| PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G57480
| PredictedReconstituted Complex | FSW = 0.0598
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
| AT2G31260
| PredictedSynthetic Lethality | FSW = 0.1127
| Unknown | APG9 (AUTOPHAGY 9) |
| AT2G47090
| PredictedSynthetic Lethality | FSW = 0.0378
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT3G11900
| PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0545
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
| AT5G01670
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0831
| Unknown | ALDOSE REDUCTASE PUTATIVE |
| AT5G06360
| PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT4G10790
| Predictedtwo hybrid | FSW = 0.0216
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
| AT1G24320
| Predictedtwo hybrid | FSW = 0.0267
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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