Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G12370 - ( SEC10 (EXOCYST COMPLEX COMPONENT SEC10) )
43 Proteins interacs with AT5G12370| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G02350
   | Experimental | FSW = 0.0193
| Class A:plasma membraneClass D:plastid (p = 0.78)nucleus (p = 0.78)cytosol (p = 0.67) | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
| AT1G02130
| PredictedSynthetic Lethality | FSW = 0.0628
| Class C:plasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT1G12360
| PredictedSynthetic LethalityAffinity Capture-Westerninterologs mappinginterologs mapping | FSW = 0.1743
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
| AT5G49830
| Predictedin vivoin vitro | FSW = 0.1056
| Class C:plasma membrane | LOCATED IN PLASMA MEMBRANE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G103851) HAS 257 BLAST HITS TO 210 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 133 FUNGI - 61 PLANTS - 56 VIRUSES - 2 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK) |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:plasma membrane | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT5G56030
| PredictedAffinity Capture-MS | FSW = 0.0092
| Class C:plasma membrane | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.0047
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT1G07940 | PredictedAffinity Capture-MS | FSW = 0.0514
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G12110
| PredictedAffinity Capture-MS | FSW = 0.0212
| Class C:plasma membrane | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G07670
| Predictedinterologs mapping | FSW = 0.0473
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
| AT5G63680
| PredictedAffinity Capture-MS | FSW = 0.0219
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
| AT4G35020
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0469
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT1G71820
| PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mapping | FSW = 0.1796
| Class C:plasma membrane | SEC6 |
| AT3G09900
| PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1196
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT1G79930
| PredictedAffinity Capture-MS | FSW = 0.0145
| Class C:plasma membrane | HSP91 ATP BINDING |
| AT5G09590
| PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT5G50850
| PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
| AT1G54220
| PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE PUTATIVE |
| AT5G40810
| PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | CYTOCHROME C1 PUTATIVE |
| AT3G23990
| PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
| AT1G79590
| Predictedtwo hybrid | FSW = 0.0163
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
| AT3G10410
| PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | SCPL49 (SERINE CARBOXYPEPTIDASE-LIKE 49) SERINE-TYPE CARBOXYPEPTIDASE |
| AT5G53460
| PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
| AT5G20080
| PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
| AT2G20510
| PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
| AT1G59900
| PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
| AT5G18280
| PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
| AT5G26710
| PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
| AT4G24520
| PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | ATR1 (ARABIDOPSIS P450 REDUCTASE 1) NADPH-HEMOPROTEIN REDUCTASE |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0027
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT1G04160
| PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0656
| Unknown | XIB (MYOSIN XI B) MOTOR |
| AT1G21170 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridco-fractionationCo-fractionationinterologs mapping | FSW = 0.2449
| Unknown | SEC5B |
| AT1G76700
| PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT2G39770
| PredictedAffinity Capture-MS | FSW = 0.0297
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
| AT3G01090
| Predictedinterologs mapping | FSW = 0.0170
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
| AT3G08560
| PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G56640
| PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridReconstituted ComplexAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.1485
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
| AT4G34490
| PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
| AT5G09550
| PredictedSynthetic Lethality | FSW = 0.1567
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT5G09350
| Predictedsynthetic growth defect | FSW = 0.1610
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
| AT5G13150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0894
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
| AT5G65180
| PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
| AT2G32510
| Predictedtwo hybrid | FSW = 0.0766
| Unknown | MAPKKK17 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.638 seconds to be build.
This page takes 0.638 seconds to be build.