Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G08560 - ( VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) hydrogen-exporting ATPase phosphorylative mechanism / proton-transporting ATPase rotational mechanism )
23 Proteins interacs with AT3G08560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.2404
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G42050 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.5161
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT1G76030 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.3137
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT2G21410 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.3841
| Unknown | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
AT4G02620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3460
| Unknown | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT1G12840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2963
| Unknown | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G58730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.3582
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT3G28715 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0952
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT4G11150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0914
| Unknown | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G46560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3161
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G64200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5895
| Unknown | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G52640 | PredictedAffinity Capture-MStwo hybridsynthetic growth defect | FSW = 0.0088
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G12370 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT5G12480 | Predictedbiochemical | FSW = 0.0226
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0063
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G05120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0272
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0238
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0208
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G18430 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1171
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G45630 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0191
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G42190 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0423
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454