Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G08560 - ( VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) hydrogen-exporting ATPase phosphorylative mechanism / proton-transporting ATPase rotational mechanism )

23 Proteins interacs with AT3G08560
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.2404

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G42050

Predicted

Affinity Capture-MS

Co-purification

Affinity Capture-MS

FSW = 0.5161

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN
AT1G76030

Predicted

Co-purification

Affinity Capture-MS

FSW = 0.3137

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT2G21410

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.3841

Unknown

VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE
AT4G02620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3460

Unknown

VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT1G12840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2963

Unknown

DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G58730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

interaction prediction

FSW = 0.3582

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT3G28715

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0952

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT4G11150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0914

Unknown

TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G46560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.3161

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G64200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5895

Unknown

VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G52640

Predicted

Affinity Capture-MS

two hybrid

synthetic growth defect

FSW = 0.0088

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G12370

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT5G12480

Predicted

biochemical

FSW = 0.0226

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G57015

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0063

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G05120

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0272

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G60620

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0238

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0208

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT3G18430

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1171

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G45630

Predicted

Synthetic Lethality

FSW = 0.0331

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G38630

Predicted

Affinity Capture-MS

FSW = 0.0065

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0191

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G42190

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0423

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454