Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12480 - ( CPK7 (calmodulin-domain protein kinase 7) ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase )

96 Proteins interacs with AT5G12480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G42050

Predicted

biochemical

FSW = 0.0164

Class C:

plasma membrane

VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN
AT3G51850

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3335

Class C:

plasma membrane

CPK13 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G69620

Predicted

biochemical

FSW = 0.0360

Class C:

plasma membrane

RPL34 (RIBOSOMAL PROTEIN L34) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G17820

Predicted

biochemical

FSW = 0.0115

Class C:

plasma membrane

ATGSKB6 COPPER ION BINDING / GLUTAMATE-AMMONIA LIGASE
AT5G38480

Predicted

biochemical

FSW = 0.0290

Class C:

plasma membrane

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2137

Class C:

plasma membrane

ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE
AT4G23650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3051

Class C:

plasma membrane

CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G74740

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2931

Class C:

plasma membrane

CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT3G18190

Predicted

biochemical

FSW = 0.0046

Class C:

plasma membrane

CHAPERONIN PUTATIVE
AT3G53890

Predicted

biochemical

FSW = 0.0051

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT5G19440

Predicted

biochemical

FSW = 0.0095

Class C:

plasma membrane

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE (CAD)
AT5G19450

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2534

Class C:

plasma membrane

CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G57530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2989

Class C:

plasma membrane

CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT5G66210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3108

Class C:

plasma membrane

CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G17890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3335

Class C:

plasma membrane

CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G04720

Predicted

Phylogenetic profile method

FSW = 0.1506

Class C:

plasma membrane

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G50360

Predicted

biochemical

FSW = 0.0106

Class C:

plasma membrane

ATCEN2 (CENTRIN2) CALCIUM ION BINDING
AT3G43810

Predicted

Affinity Capture-MS

Affinity Capture-MS

biochemical

Reconstituted Complex

FSW = 0.0135

Class C:

plasma membrane

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G79930

Predicted

biochemical

FSW = 0.0068

Class C:

plasma membrane

HSP91 ATP BINDING
AT1G61950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3322

Class C:

plasma membrane

CPK19 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G23990

Predicted

biochemical

FSW = 0.0024

Unknown

HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT1G73430

Predicted

biochemical

FSW = 0.0073

Unknown

SEC34-LIKE FAMILY PROTEIN
AT2G05630

Predicted

biochemical

FSW = 0.0056

Unknown

AUTOPHAGY 8D (APG8D)
AT5G40670

Predicted

biochemical

FSW = 0.0100

Unknown

PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN
AT3G22110

Predicted

biochemical

FSW = 0.0034

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G11860

Predicted

biochemical

FSW = 0.0124

Unknown

AMINOMETHYLTRANSFERASE PUTATIVE
AT4G34200

Predicted

biochemical

FSW = 0.0147

Unknown

EDA9 (EMBRYO SAC DEVELOPMENT ARREST 9) ATP BINDING
AT5G17990

Predicted

biochemical

FSW = 0.0081

Unknown

TRP1 (TRYPTOPHAN BIOSYNTHESIS 1) ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
AT1G11790

Predicted

biochemical

FSW = 0.0323

Unknown

ADT1 (AROGENATE DEHYDRATASE 1) AROGENATE DEHYDRATASE/ PREPHENATE DEHYDRATASE
AT2G28880

Predicted

biochemical

FSW = 0.0269

Unknown

EMB1997 (EMBRYO DEFECTIVE 1997) ANTHRANILATE SYNTHASE/ CATALYTIC/ OXO-ACID-LYASE
AT1G24360

Predicted

biochemical

FSW = 0.0135

Unknown

3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE
AT4G16760

Predicted

biochemical

FSW = 0.0044

Unknown

ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE
AT2G40360

Predicted

biochemical

FSW = 0.0152

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G09570

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1554

Unknown

CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT1G48130

Predicted

biochemical

FSW = 0.0225

Unknown

ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE
AT1G19120

Predicted

biochemical

FSW = 0.0027

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G75230

Predicted

biochemical

FSW = 0.0044

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT4G10710

Predicted

biochemical

FSW = 0.0127

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT2G36170Predicted

biochemical

FSW = 0.0098

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT1G48920

Predicted

biochemical

FSW = 0.0106

Unknown

ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G24500

Predicted

biochemical

FSW = 0.0218

Unknown

FZF TRANSCRIPTION FACTOR
AT4G27680

Predicted

biochemical

FSW = 0.0124

Unknown

MSP1 PROTEIN PUTATIVE / INTRAMITOCHONDRIAL SORTING PROTEIN PUTATIVE
AT5G37810

Predicted

biochemical

FSW = 0.0108

Unknown

NIP41 (NOD26-LIKE INTRINSIC PROTEIN 41) WATER CHANNEL
AT3G56340

Predicted

biochemical

FSW = 0.0097

Unknown

40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT1G72550

Predicted

biochemical

FSW = 0.0162

Unknown

TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN
AT2G46470

Predicted

biochemical

FSW = 0.0081

Unknown

OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE)
AT1G06080

Predicted

biochemical

FSW = 0.0052

Unknown

ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE
AT1G07430

Predicted

biochemical

FSW = 0.0051

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G17145

Predicted

biochemical

FSW = 0.0124

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT1G24290

Predicted

biochemical

FSW = 0.0090

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G51710

Predicted

biochemical

FSW = 0.0115

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54390

Predicted

biochemical

FSW = 0.0203

Unknown

PHD FINGER PROTEIN-RELATED
AT1G74250

Predicted

biochemical

FSW = 0.0127

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G07690

Predicted

biochemical

FSW = 0.0080

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G17280

Predicted

biochemical

FSW = 0.0162

Unknown

PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
AT2G26970

Predicted

biochemical

FSW = 0.0090

Unknown

EXONUCLEASE FAMILY PROTEIN
AT2G40430

Predicted

biochemical

FSW = 0.0040

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT2G47020

Predicted

biochemical

FSW = 0.0085

Unknown

PEPTIDE CHAIN RELEASE FACTOR PUTATIVE
AT3G08560

Predicted

biochemical

FSW = 0.0226

Unknown

VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G09560

Predicted

biochemical

FSW = 0.0138

Unknown

LIPIN FAMILY PROTEIN
AT3G13235

Predicted

biochemical

FSW = 0.0101

Unknown

UBIQUITIN FAMILY PROTEIN
AT3G18520

Predicted

biochemical

FSW = 0.0065

Unknown

HDA15 HISTONE DEACETYLASE
AT3G52390

Predicted

biochemical

FSW = 0.0014

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G52590Predicted

biochemical

FSW = 0.0189

Unknown

UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G04950

Predicted

biochemical

FSW = 0.0084

Unknown

THIOREDOXIN FAMILY PROTEIN
AT4G05440

Predicted

biochemical

FSW = 0.0135

Unknown

EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35)
AT4G21800

Predicted

biochemical

FSW = 0.0023

Unknown

QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING
AT4G24040

Predicted

biochemical

FSW = 0.0122

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G30480

Predicted

biochemical

FSW = 0.0211

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT4G31770

Predicted

biochemical

FSW = 0.0124

Unknown

CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT4G31985

Predicted

biochemical

FSW = 0.0176

Unknown

60S RIBOSOMAL PROTEIN L39 (RPL39C)
AT4G34910

Predicted

biochemical

FSW = 0.0203

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT5G02170

Predicted

biochemical

FSW = 0.0269

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G04850

Predicted

biochemical

FSW = 0.0528

Unknown

VPS602
AT5G09350

Predicted

biochemical

FSW = 0.0092

Unknown

PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G10830

Predicted

biochemical

FSW = 0.0065

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT1G78770

Predicted

Synthetic Lethality

FSW = 0.0054

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT4G19645

Predicted

Affinity Capture-MS

FSW = 0.0074

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT5G19150

Predicted

biochemical

FSW = 0.0036

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G42190

Predicted

biochemical

FSW = 0.0129

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G43500

Predicted

biochemical

FSW = 0.0134

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G49950

Predicted

biochemical

FSW = 0.0102

Unknown

EMBRYOGENESIS-ASSOCIATED PROTEIN-RELATED
AT5G51940

Predicted

biochemical

FSW = 0.0035

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G61150

Predicted

biochemical

FSW = 0.0109

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G61770

Predicted

biochemical

FSW = 0.0164

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65900

Predicted

biochemical

FSW = 0.0099

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G23580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3180

Unknown

CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G31500

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0222

Unknown

CPK24 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G12180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3419

Unknown

CPK17 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G36070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2167

Unknown

CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G41860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2821

Unknown

CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G19360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2336

Unknown

CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G50700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3180

Unknown

CPK33 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G04695

Predicted

Phylogenetic profile method

FSW = 0.1388

Unknown

CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G04700

Predicted

Phylogenetic profile method

FSW = 0.1028

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G16420

Predicted

Gene fusion method

FSW = 0.0095

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454