Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G12480 - ( CPK7 (calmodulin-domain protein kinase 7) ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase )
96 Proteins interacs with AT5G12480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G42050 | Predictedbiochemical | FSW = 0.0164
| Class C:plasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT3G51850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3335
| Class C:plasma membrane | CPK13 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G69620 | Predictedbiochemical | FSW = 0.0360
| Class C:plasma membrane | RPL34 (RIBOSOMAL PROTEIN L34) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G17820 | Predictedbiochemical | FSW = 0.0115
| Class C:plasma membrane | ATGSKB6 COPPER ION BINDING / GLUTAMATE-AMMONIA LIGASE |
AT5G38480 | Predictedbiochemical | FSW = 0.0290
| Class C:plasma membrane | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2137
| Class C:plasma membrane | ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT4G23650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3051
| Class C:plasma membrane | CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G74740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2931
| Class C:plasma membrane | CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT3G18190 | Predictedbiochemical | FSW = 0.0046
| Class C:plasma membrane | CHAPERONIN PUTATIVE |
AT3G53890 | Predictedbiochemical | FSW = 0.0051
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
AT5G19440 | Predictedbiochemical | FSW = 0.0095
| Class C:plasma membrane | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE (CAD) |
AT5G19450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2534
| Class C:plasma membrane | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G57530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2989
| Class C:plasma membrane | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G66210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3108
| Class C:plasma membrane | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G17890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3335
| Class C:plasma membrane | CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04720 | PredictedPhylogenetic profile method | FSW = 0.1506
| Class C:plasma membrane | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G50360 | Predictedbiochemical | FSW = 0.0106
| Class C:plasma membrane | ATCEN2 (CENTRIN2) CALCIUM ION BINDING |
AT3G43810 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemicalReconstituted Complex | FSW = 0.0135
| Class C:plasma membrane | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G79930 | Predictedbiochemical | FSW = 0.0068
| Class C:plasma membrane | HSP91 ATP BINDING |
AT1G61950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3322
| Class C:plasma membrane | CPK19 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G23990 | Predictedbiochemical | FSW = 0.0024
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT1G73430 | Predictedbiochemical | FSW = 0.0073
| Unknown | SEC34-LIKE FAMILY PROTEIN |
AT2G05630 | Predictedbiochemical | FSW = 0.0056
| Unknown | AUTOPHAGY 8D (APG8D) |
AT5G40670 | Predictedbiochemical | FSW = 0.0100
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT3G22110 | Predictedbiochemical | FSW = 0.0034
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G11860 | Predictedbiochemical | FSW = 0.0124
| Unknown | AMINOMETHYLTRANSFERASE PUTATIVE |
AT4G34200 | Predictedbiochemical | FSW = 0.0147
| Unknown | EDA9 (EMBRYO SAC DEVELOPMENT ARREST 9) ATP BINDING |
AT5G17990 | Predictedbiochemical | FSW = 0.0081
| Unknown | TRP1 (TRYPTOPHAN BIOSYNTHESIS 1) ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
AT1G11790 | Predictedbiochemical | FSW = 0.0323
| Unknown | ADT1 (AROGENATE DEHYDRATASE 1) AROGENATE DEHYDRATASE/ PREPHENATE DEHYDRATASE |
AT2G28880 | Predictedbiochemical | FSW = 0.0269
| Unknown | EMB1997 (EMBRYO DEFECTIVE 1997) ANTHRANILATE SYNTHASE/ CATALYTIC/ OXO-ACID-LYASE |
AT1G24360 | Predictedbiochemical | FSW = 0.0135
| Unknown | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
AT4G16760 | Predictedbiochemical | FSW = 0.0044
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT2G40360 | Predictedbiochemical | FSW = 0.0152
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G09570 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1554
| Unknown | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT1G48130 | Predictedbiochemical | FSW = 0.0225
| Unknown | ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE |
AT1G19120 | Predictedbiochemical | FSW = 0.0027
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G75230 | Predictedbiochemical | FSW = 0.0044
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT4G10710 | Predictedbiochemical | FSW = 0.0127
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT2G36170 | Predictedbiochemical | FSW = 0.0098
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G48920 | Predictedbiochemical | FSW = 0.0106
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G24500 | Predictedbiochemical | FSW = 0.0218
| Unknown | FZF TRANSCRIPTION FACTOR |
AT4G27680 | Predictedbiochemical | FSW = 0.0124
| Unknown | MSP1 PROTEIN PUTATIVE / INTRAMITOCHONDRIAL SORTING PROTEIN PUTATIVE |
AT5G37810 | Predictedbiochemical | FSW = 0.0108
| Unknown | NIP41 (NOD26-LIKE INTRINSIC PROTEIN 41) WATER CHANNEL |
AT3G56340 | Predictedbiochemical | FSW = 0.0097
| Unknown | 40S RIBOSOMAL PROTEIN S26 (RPS26C) |
AT1G72550 | Predictedbiochemical | FSW = 0.0162
| Unknown | TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN |
AT2G46470 | Predictedbiochemical | FSW = 0.0081
| Unknown | OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) |
AT1G06080 | Predictedbiochemical | FSW = 0.0052
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G07430 | Predictedbiochemical | FSW = 0.0051
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G17145 | Predictedbiochemical | FSW = 0.0124
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G24290 | Predictedbiochemical | FSW = 0.0090
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G51710 | Predictedbiochemical | FSW = 0.0115
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G54390 | Predictedbiochemical | FSW = 0.0203
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G74250 | Predictedbiochemical | FSW = 0.0127
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G07690 | Predictedbiochemical | FSW = 0.0080
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G17280 | Predictedbiochemical | FSW = 0.0162
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT2G26970 | Predictedbiochemical | FSW = 0.0090
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT2G40430 | Predictedbiochemical | FSW = 0.0040
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT2G47020 | Predictedbiochemical | FSW = 0.0085
| Unknown | PEPTIDE CHAIN RELEASE FACTOR PUTATIVE |
AT3G08560 | Predictedbiochemical | FSW = 0.0226
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G09560 | Predictedbiochemical | FSW = 0.0138
| Unknown | LIPIN FAMILY PROTEIN |
AT3G13235 | Predictedbiochemical | FSW = 0.0101
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT3G18520 | Predictedbiochemical | FSW = 0.0065
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G52390 | Predictedbiochemical | FSW = 0.0014
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G52590 | Predictedbiochemical | FSW = 0.0189
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G04950 | Predictedbiochemical | FSW = 0.0084
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G05440 | Predictedbiochemical | FSW = 0.0135
| Unknown | EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35) |
AT4G21800 | Predictedbiochemical | FSW = 0.0023
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G24040 | Predictedbiochemical | FSW = 0.0122
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT4G30480 | Predictedbiochemical | FSW = 0.0211
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G31770 | Predictedbiochemical | FSW = 0.0124
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT4G31985 | Predictedbiochemical | FSW = 0.0176
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT4G34910 | Predictedbiochemical | FSW = 0.0203
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G02170 | Predictedbiochemical | FSW = 0.0269
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G04850 | Predictedbiochemical | FSW = 0.0528
| Unknown | VPS602 |
AT5G09350 | Predictedbiochemical | FSW = 0.0092
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G10830 | Predictedbiochemical | FSW = 0.0065
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0054
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G19150 | Predictedbiochemical | FSW = 0.0036
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G42190 | Predictedbiochemical | FSW = 0.0129
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G43500 | Predictedbiochemical | FSW = 0.0134
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G49950 | Predictedbiochemical | FSW = 0.0102
| Unknown | EMBRYOGENESIS-ASSOCIATED PROTEIN-RELATED |
AT5G51940 | Predictedbiochemical | FSW = 0.0035
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G61150 | Predictedbiochemical | FSW = 0.0109
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G61770 | Predictedbiochemical | FSW = 0.0164
| Unknown | PPAN (PETER PAN-LIKE PROTEIN) |
AT5G65900 | Predictedbiochemical | FSW = 0.0099
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G23580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3180
| Unknown | CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G31500 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0222
| Unknown | CPK24 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G12180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3419
| Unknown | CPK17 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G36070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2167
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G41860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2821
| Unknown | CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G19360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2336
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G50700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3180
| Unknown | CPK33 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04695 | PredictedPhylogenetic profile method | FSW = 0.1388
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G04700 | PredictedPhylogenetic profile method | FSW = 0.1028
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G16420 | PredictedGene fusion method | FSW = 0.0095
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454