Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18190 - ( chaperonin putative )

32 Proteins interacs with AT3G18190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G52640

Predicted

two hybrid

FSW = 0.0086

Class C:

plasma membrane

cytosol

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G12110

Predicted

Phenotypic Suppression

interaction prediction

FSW = 0.0271

Class C:

plasma membrane

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G37620

Predicted

in vitro

FSW = 0.0558

Class C:

plasma membrane

ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G12480

Predicted

biochemical

FSW = 0.0046

Class C:

plasma membrane

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G24510

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2558

Class C:

plasma membrane

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT5G20890

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Phylogenetic profile method

Co-expression

FSW = 0.2200

Class C:

plasma membrane

CHAPERONIN PUTATIVE
AT3G02530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3409

Class C:

cytosol

CHAPERONIN PUTATIVE
AT3G18140

Predicted

interologs mapping

FSW = 0.0821

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G64790Predicted

Affinity Capture-MS

FSW = 0.0510

Unknown

BINDING
AT4G30580

Predicted

Affinity Capture-MS

FSW = 0.0910

Unknown

ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE
AT3G12050

Predicted

Affinity Capture-MS

FSW = 0.0412

Unknown

AHA1 DOMAIN-CONTAINING PROTEIN
AT3G27640

Predicted

Affinity Capture-MS

FSW = 0.1196

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G79750

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0387

Unknown

ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT3G20050

Predicted

interaction prediction

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2161

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT4G34540

Predicted

in vitro

FSW = 0.0446

Unknown

ISOFLAVONE REDUCTASE FAMILY PROTEIN
AT5G26360

Predicted

in vitro

Co-purification

interaction prediction

Phylogenetic profile method

Co-expression

FSW = 0.1513

Unknown

CHAPERONIN PUTATIVE
AT1G59890

Predicted

Affinity Capture-MS

FSW = 0.0201

Unknown

SNL5 (SIN3-LIKE 5)
AT1G13160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0192

Unknown

SDA1 FAMILY PROTEIN
AT1G16280

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0393

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G53880Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0368

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT3G11830

Predicted

Affinity Capture-MS

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2973

Unknown

CHAPERONIN PUTATIVE
AT5G14240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1943

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK)
AT5G09620

Predicted

Affinity Capture-MS

FSW = 0.0306

Unknown

OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN
AT5G20600

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK)
AT1G10450

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

SNL6 (SIN3-LIKE 6)
AT2G22040

Predicted

interologs mapping

FSW = 0.0615

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G35700

Predicted

interaction prediction

FSW = 0.0752

Unknown

FIM2 (FIMBRIN-LIKE PROTEIN 2) ACTIN BINDING
AT1G72340

Predicted

interaction prediction

FSW = 0.0167

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT4G15930

Predicted

interaction prediction

FSW = 0.0473

Unknown

MICROTUBULE MOTOR
AT3G03960

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3879

Unknown

CHAPERONIN PUTATIVE
AT5G16070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3506

Unknown

CHAPERONIN PUTATIVE
AT2G06000

Predicted

Gene fusion method

FSW = 0.0262

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454