Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18190 - ( chaperonin putative )
32 Proteins interacs with AT3G18190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G52640 | Predictedtwo hybrid | FSW = 0.0086
| Class C:plasma membranecytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G12110 | PredictedPhenotypic Suppressioninteraction prediction | FSW = 0.0271
| Class C:plasma membrane | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G37620 | Predictedin vitro | FSW = 0.0558
| Class C:plasma membrane | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G12480 | Predictedbiochemical | FSW = 0.0046
| Class C:plasma membrane | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G24510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2558
| Class C:plasma membrane | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT5G20890 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.2200
| Class C:plasma membrane | CHAPERONIN PUTATIVE |
AT3G02530 | PredictedAffinity Capture-MSAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3409
| Class C:cytosol | CHAPERONIN PUTATIVE |
AT3G18140 | Predictedinterologs mapping | FSW = 0.0821
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0510
| Unknown | BINDING |
AT4G30580 | PredictedAffinity Capture-MS | FSW = 0.0910
| Unknown | ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE |
AT3G12050 | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT3G27640 | PredictedAffinity Capture-MS | FSW = 0.1196
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G79750 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0387
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT3G20050 | Predictedinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2161
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT4G34540 | Predictedin vitro | FSW = 0.0446
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G26360 | Predictedin vitroCo-purificationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.1513
| Unknown | CHAPERONIN PUTATIVE |
AT1G59890 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G13160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0192
| Unknown | SDA1 FAMILY PROTEIN |
AT1G16280 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0393
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G53880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0368
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT3G11830 | PredictedAffinity Capture-MSGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2973
| Unknown | CHAPERONIN PUTATIVE |
AT5G14240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1943
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) PHOSDUCIN (INTERPROIPR001200) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 750 BLAST HITS TO 750 PROTEINS IN 282 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 486 FUNGI - 126 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 85 (SOURCE NCBI BLINK) |
AT5G09620 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT1G10450 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | SNL6 (SIN3-LIKE 6) |
AT2G22040 | Predictedinterologs mapping | FSW = 0.0615
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G35700 | Predictedinteraction prediction | FSW = 0.0752
| Unknown | FIM2 (FIMBRIN-LIKE PROTEIN 2) ACTIN BINDING |
AT1G72340 | Predictedinteraction prediction | FSW = 0.0167
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G15930 | Predictedinteraction prediction | FSW = 0.0473
| Unknown | MICROTUBULE MOTOR |
AT3G03960 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3879
| Unknown | CHAPERONIN PUTATIVE |
AT5G16070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3506
| Unknown | CHAPERONIN PUTATIVE |
AT2G06000 | PredictedGene fusion method | FSW = 0.0262
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454