Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37620 - ( ACT1 (ACTIN 1) structural constituent of cytoskeleton )
26 Proteins interacs with AT2G37620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G08670 | Predictedtwo hybrid | FSW = 0.0149
| Class C:plasma membrane | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT1G49240 | PredictedPhylogenetic profile method | FSW = 0.2381
| Class C:plasma membrane | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G18780 | PredictedShared biological functionGene fusion methodPhylogenetic profile method | FSW = 0.6696
| Class C:plasma membrane | ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G09810 | PredictedShared biological functionGene fusion methodPhylogenetic profile method | FSW = 0.6122
| Class C:plasma membrane | ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G34460 | PredictedGene fusion method | FSW = 0.1516
| Class C:plasma membrane | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G12110 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1946
| Class C:plasma membrane | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G18190 | Predictedin vitro | FSW = 0.0558
| Class C:plasma membrane | CHAPERONIN PUTATIVE |
AT1G24510 | PredictedAffinity Capture-MSin vitro | FSW = 0.0845
| Class C:plasma membrane | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT3G53750 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.6436
| Class C:extracellular | ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G42170 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.6594
| Unknown | ACTIN PUTATIVE |
AT1G18450 | PredictedPhylogenetic profile method | FSW = 0.4553
| Unknown | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G46520 | Predictedtwo hybridGene fusion methodPhylogenetic profile method | FSW = 0.6110
| Unknown | ACT12 (ACTIN-12) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G59370 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.6912
| Unknown | ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G26700 | Predictedco-fractionationCo-fractionation | FSW = 0.0324
| Unknown | ATFIM1 ACTIN BINDING |
AT3G46010 | PredictedAffinity Capture-MSin vitrotwo hybrid | FSW = 0.1505
| Unknown | ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) ACTIN BINDING |
AT5G56600 | PredictedPhenotypic Suppression | FSW = 0.0632
| Unknown | PRF3 (PROFILIN 3) ACTIN BINDING |
AT5G59180 | Predictedtwo hybridReconstituted Complex | FSW = 0.0178
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT2G42120 | PredictedSynthetic Rescue | FSW = 0.0079
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G42090 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.6829
| Unknown | ACT9 (ACTIN 9) ATP BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G42100 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.6829
| Unknown | ACTIN PUTATIVE |
AT3G60830 | PredictedPhylogenetic profile method | FSW = 0.6594
| Unknown | ATARP7 (ACTIN-RELATED PROTEIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20610 | Predictedsynthetic growth defect | FSW = 0.0108
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G55190 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G24706 | Predictedtwo hybrid | FSW = 0.0050
| Unknown | UNKNOWN PROTEIN |
AT5G59890 | Predictedtwo hybrid | FSW = 0.0496
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT3G27000 | PredictedPhylogenetic profile method | FSW = 0.2119
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454