Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60830 - ( ATARP7 (ACTIN-RELATED PROTEIN 7) structural constituent of cytoskeleton )

14 Proteins interacs with AT3G60830
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G49240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3038

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G18780

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8721

Unknown

ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G09810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7951

Unknown

ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G12110

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1877

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G37620

Predicted

Phylogenetic profile method

FSW = 0.6594

Unknown

ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G42170

Predicted

Phylogenetic profile method

FSW = 0.9322

Unknown

ACTIN PUTATIVE
AT3G53750Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.7724

Unknown

ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G18510

Predicted

Gene fusion method

FSW = 0.0181

Unknown

EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G18450

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6437

Unknown

ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G46520

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6759

Unknown

ACT12 (ACTIN-12) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G59370

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9011

Unknown

ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G42100

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9655

Unknown

ACTIN PUTATIVE
AT2G42090

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9655

Unknown

ACT9 (ACTIN 9) ATP BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G27000

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2234

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454