Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G46520 - ( ACT12 (ACTIN-12) structural constituent of cytoskeleton )
25 Proteins interacs with AT3G46520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25500 | ExperimentalReconstituted Complex | FSW = 0.0298
| Class B:plasma membranemitochondrioncytoskeleton | AFH1 (FORMIN HOMOLOGY 1) ACTIN BINDING / ACTIN FILAMENT BINDING / PROTEIN BINDING |
AT1G70140 | ExperimentalReconstituted Complex | FSW = 0.0282
| Class B:plasma membranemitochondrioncell plate | ATFH8 (FORMIN 8) ACTIN BINDING / ACTIN FILAMENT BINDING / PROFILIN BINDING |
AT2G20370 | ExperimentalAffinity Capture-Western | FSW = 0.0282
| Class B:mitochondriongolgiClass D:cytosol (p = 0.67) | MUR3 (MURUS 3) CATALYTIC/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G29890 | ExperimentalReconstituted Complex | FSW = 0.0298
| Class B:mitochondrioncytoskeletonClass D:cytosol (p = 0.67) | VLN1 (VILLIN-LIKE 1) ACTIN BINDING / ACTIN FILAMENT BINDING |
AT5G54650 | ExperimentalReconstituted Complex | FSW = 0.0290
| Class B:mitochondrioncell plate | FH5 (FORMIN HOMOLOGY5) ACTIN BINDING |
AT5G09810 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6272
| Class C:mitochondrion | ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G12110 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1829
| Class C:mitochondrion | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G59370 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.7081
| Class C:mitochondrion | ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G49240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2439
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G18780 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6860
| Unknown | ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G34460 | PredictedGene fusion method | FSW = 0.1339
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G37620 | Predictedtwo hybridGene fusion methodPhylogenetic profile method | FSW = 0.6110
| Unknown | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G19960 | PredictedPhenotypic SuppressionEnriched domain pairCo-expression | FSW = 0.0336
| Unknown | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR |
AT2G42170 | PredictedPhylogenetic profile method | FSW = 0.6759
| Unknown | ACTIN PUTATIVE |
AT3G53750 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.6589
| Unknown | ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G25880 | Predictedtwo hybrid | FSW = 0.0212
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT1G18450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4667
| Unknown | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G39960 | Predictedtwo hybrid | FSW = 0.1143
| Unknown | MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT PUTATIVE (SPC25) |
AT3G46010 | PredictedAffinity Capture-MSin vivotwo hybrid | FSW = 0.1552
| Unknown | ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) ACTIN BINDING |
AT3G60830 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6759
| Unknown | ATARP7 (ACTIN-RELATED PROTEIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G42100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7000
| Unknown | ACTIN PUTATIVE |
AT2G42090 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7000
| Unknown | ACT9 (ACTIN 9) ATP BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G27000 | PredictedAffinity Capture-MSin vivoGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1799
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G15930 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | MICROTUBULE MOTOR |
AT5G59890 | Predictedtwo hybrid | FSW = 0.0512
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454