Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G46520 - ( ACT12 (ACTIN-12) structural constituent of cytoskeleton )

25 Proteins interacs with AT3G46520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G25500

Experimental

Reconstituted Complex

FSW = 0.0298

Class B:

plasma membrane

mitochondrion

cytoskeleton

AFH1 (FORMIN HOMOLOGY 1) ACTIN BINDING / ACTIN FILAMENT BINDING / PROTEIN BINDING
AT1G70140

Experimental

Reconstituted Complex

FSW = 0.0282

Class B:

plasma membrane

mitochondrion

cell plate

ATFH8 (FORMIN 8) ACTIN BINDING / ACTIN FILAMENT BINDING / PROFILIN BINDING
AT2G20370

Experimental

Affinity Capture-Western

FSW = 0.0282

Class B:

mitochondrion

golgi

Class D:

cytosol (p = 0.67)

MUR3 (MURUS 3) CATALYTIC/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G29890

Experimental

Reconstituted Complex

FSW = 0.0298

Class B:

mitochondrion

cytoskeleton

Class D:

cytosol (p = 0.67)

VLN1 (VILLIN-LIKE 1) ACTIN BINDING / ACTIN FILAMENT BINDING
AT5G54650

Experimental

Reconstituted Complex

FSW = 0.0290

Class B:

mitochondrion

cell plate

FH5 (FORMIN HOMOLOGY5) ACTIN BINDING
AT5G09810

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6272

Class C:

mitochondrion

ACT7 (ACTIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G12110

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1829

Class C:

mitochondrion

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G59370

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.7081

Class C:

mitochondrion

ACT4 (ACTIN 4) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G49240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2439

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G18780

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6860

Unknown

ACT2 (ACTIN 2) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G34460

Predicted

Gene fusion method

FSW = 0.1339

Unknown

AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G37620

Predicted

two hybrid

Gene fusion method

Phylogenetic profile method

FSW = 0.6110

Unknown

ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G19960

Predicted

Phenotypic Suppression

Enriched domain pair

Co-expression

FSW = 0.0336

Unknown

ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR
AT2G42170

Predicted

Phylogenetic profile method

FSW = 0.6759

Unknown

ACTIN PUTATIVE
AT3G53750Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.6589

Unknown

ACT3 (ACTIN 3) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G25880

Predicted

two hybrid

FSW = 0.0212

Unknown

ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT1G18450

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4667

Unknown

ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G39960

Predicted

two hybrid

FSW = 0.1143

Unknown

MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT PUTATIVE (SPC25)
AT3G46010

Predicted

Affinity Capture-MS

in vivo

two hybrid

FSW = 0.1552

Unknown

ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) ACTIN BINDING
AT3G60830

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6759

Unknown

ATARP7 (ACTIN-RELATED PROTEIN 7) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G42100

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7000

Unknown

ACTIN PUTATIVE
AT2G42090

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7000

Unknown

ACT9 (ACTIN 9) ATP BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G27000

Predicted

Affinity Capture-MS

in vivo

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1799

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G15930

Predicted

two hybrid

FSW = 0.0077

Unknown

MICROTUBULE MOTOR
AT5G59890

Predicted

two hybrid

FSW = 0.0512

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454