Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24510 - ( T-complex protein 1 epsilon subunit putative / TCP-1-epsilon putative / chaperonin putative )

31 Proteins interacs with AT1G24510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G34460

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0790

Class C:

plasma membrane

AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G37620

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0845

Class C:

plasma membrane

ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G36160

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0248

Class C:

plasma membrane

ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT3G18190

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2558

Class C:

plasma membrane

CHAPERONIN PUTATIVE
AT5G20890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4882

Class C:

plasma membrane

CHAPERONIN PUTATIVE
AT5G63110

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0094

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G29260

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0872

Unknown

PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING
AT3G10220

Predicted

two hybrid

interaction prediction

Co-expression

FSW = 0.0294

Unknown

TUBULIN FOLDING COFACTOR B
AT5G17690

Predicted

two hybrid

FSW = 0.0115

Unknown

TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT5G25150

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0322

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT4G02930

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0059

Unknown

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT3G02530

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5128

Unknown

CHAPERONIN PUTATIVE
AT4G15900

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0239

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G20050

Predicted

in vitro

Phylogenetic profile method

Co-expression

FSW = 0.3551

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT3G13200

Predicted

two hybrid

FSW = 0.0269

Unknown

EMB2769 (EMBRYO DEFECTIVE 2769)
AT4G34540

Predicted

in vitro

Affinity Capture-MS

Co-crystal Structure

FSW = 0.0458

Unknown

ISOFLAVONE REDUCTASE FAMILY PROTEIN
AT5G26360

Predicted

in vitro

Co-purification

Phylogenetic profile method

Co-expression

FSW = 0.3678

Unknown

CHAPERONIN PUTATIVE
AT1G17130

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0520

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G17720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0702

Unknown

ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G19240

Predicted

Affinity Capture-MS

FSW = 0.1947

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) VACUOLAR IMPORT AND DEGRADATION VID27-RELATED (INTERPROIPR013863) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DEM PROTEIN-RELATED / DEFECTIVE EMBRYO AND MERISTEMS PROTEIN-RELATED (TAIRAT4G334001) HAS 206 BLAST HITS TO 202 PROTEINS IN 88 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 11 FUNGI - 117 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 40 (SOURCE NCBI BLINK)
AT3G27000

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0335

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G18905

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0842

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G28450

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0824

Unknown

NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G13480

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0429

Unknown

FY PROTEIN BINDING
AT4G18900

Predicted

Affinity Capture-MS

FSW = 0.0997

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G16650

Predicted

Affinity Capture-MS

FSW = 0.0588

Unknown

PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT3G11830

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2646

Unknown

CHAPERONIN PUTATIVE
AT3G03960

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2814

Unknown

CHAPERONIN PUTATIVE
AT5G16070

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.4141

Unknown

CHAPERONIN PUTATIVE
AT1G07740

Predicted

Gene fusion method

FSW = 0.0275

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G16420

Predicted

Gene fusion method

FSW = 0.0936

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454