Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24510 - ( T-complex protein 1 epsilon subunit putative / TCP-1-epsilon putative / chaperonin putative )
31 Proteins interacs with AT1G24510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G34460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0790
| Class C:plasma membrane | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G37620 | PredictedAffinity Capture-MSin vitro | FSW = 0.0845
| Class C:plasma membrane | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G36160 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0248
| Class C:plasma membrane | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE |
AT3G18190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2558
| Class C:plasma membrane | CHAPERONIN PUTATIVE |
AT5G20890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4882
| Class C:plasma membrane | CHAPERONIN PUTATIVE |
AT5G63110 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0094
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G29260 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0872
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT3G10220 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0294
| Unknown | TUBULIN FOLDING COFACTOR B |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0115
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT5G25150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0322
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT4G02930 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0059
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT3G02530 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5128
| Unknown | CHAPERONIN PUTATIVE |
AT4G15900 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0239
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G20050 | Predictedin vitroPhylogenetic profile methodCo-expression | FSW = 0.3551
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT3G13200 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | EMB2769 (EMBRYO DEFECTIVE 2769) |
AT4G34540 | Predictedin vitroAffinity Capture-MSCo-crystal Structure | FSW = 0.0458
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G26360 | Predictedin vitroCo-purificationPhylogenetic profile methodCo-expression | FSW = 0.3678
| Unknown | CHAPERONIN PUTATIVE |
AT1G17130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0520
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G17720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0702
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G19240 | PredictedAffinity Capture-MS | FSW = 0.1947
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) VACUOLAR IMPORT AND DEGRADATION VID27-RELATED (INTERPROIPR013863) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DEM PROTEIN-RELATED / DEFECTIVE EMBRYO AND MERISTEMS PROTEIN-RELATED (TAIRAT4G334001) HAS 206 BLAST HITS TO 202 PROTEINS IN 88 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 11 FUNGI - 117 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 40 (SOURCE NCBI BLINK) |
AT3G27000 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0335
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G18905 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0842
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G28450 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0824
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G13480 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0429
| Unknown | FY PROTEIN BINDING |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0997
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G16650 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT3G11830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2646
| Unknown | CHAPERONIN PUTATIVE |
AT3G03960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2814
| Unknown | CHAPERONIN PUTATIVE |
AT5G16070 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4141
| Unknown | CHAPERONIN PUTATIVE |
AT1G07740 | PredictedGene fusion method | FSW = 0.0275
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G16420 | PredictedGene fusion method | FSW = 0.0936
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454