Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26360 - ( chaperonin putative )
41 Proteins interacs with AT5G26360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08580 | PredictedSynthetic Lethality | FSW = 0.0709
| Unknown | AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING |
AT5G13490 | PredictedSynthetic Lethality | FSW = 0.0591
| Unknown | AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING |
AT5G02500 | Predictedin vivoAffinity Capture-MS | FSW = 0.0167
| Unknown | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT1G64330 | PredictedGene fusion method | FSW = 0.0165
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT4G34460 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0380
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G36880 | Predictedtwo hybrid | FSW = 0.0386
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G17390 | Predictedtwo hybrid | FSW = 0.0309
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT2G24765 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING |
AT3G18190 | Predictedin vitroCo-purificationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.1513
| Unknown | CHAPERONIN PUTATIVE |
AT5G47700 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0495
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT1G24510 | Predictedin vitroCo-purificationPhylogenetic profile methodCo-expression | FSW = 0.3678
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT5G02490 | Predictedin vivoAffinity Capture-MS | FSW = 0.0082
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT5G20890 | PredictedSynthetic Lethalityin vitroCo-purificationinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6118
| Unknown | CHAPERONIN PUTATIVE |
AT1G29260 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0686
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT4G26720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0332
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G01850 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT5G25150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0253
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT3G02530 | Predictedinterologs mappingin vitroCo-purificationPhylogenetic profile methodCo-expression | FSW = 0.3724
| Unknown | CHAPERONIN PUTATIVE |
AT5G66130 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G03730 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0042
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G42970 | Predictedtwo hybridtwo hybrid | FSW = 0.0093
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT2G31300 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0608
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT2G30910 | PredictedSynthetic Lethality | FSW = 0.0665
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G20050 | PredictedSynthetic Lethalityin vitroCo-purificationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.3199
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G09230 | Predictedtwo hybridtwo hybrid | FSW = 0.0773
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G24510 | Predictedtwo hybrid | FSW = 0.0473
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT3G11830 | Predictedin vitroCo-purificationPhylogenetic profile methodCo-expression | FSW = 0.1815
| Unknown | CHAPERONIN PUTATIVE |
AT5G16070 | Predictedin vitroGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3805
| Unknown | CHAPERONIN PUTATIVE |
AT3G03960 | PredictedCo-purificationPhylogenetic profile methodCo-expression | FSW = 0.1972
| Unknown | CHAPERONIN PUTATIVE |
AT1G17720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0556
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G29990 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0185
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G80710 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G40110 | PredictedAffinity Capture-MS | FSW = 0.0663
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G10530 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0322
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22480 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0332
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G11920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0136
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G18905 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0667
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G28450 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0851
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G27740 | PredictedAffinity Capture-MS | FSW = 0.0818
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YIPPEE-LIKE PROTEIN (INTERPROIPR004910) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G277451) HAS 684 BLAST HITS TO 682 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 389 FUNGI - 132 PLANTS - 111 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK) |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0789
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454