Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17720 - ( ATB BETA nucleotide binding / protein phosphatase type 2A regulator )
47 Proteins interacs with AT1G17720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0215
| Unknown | HISTONE H4 |
AT5G59690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0146
| Unknown | HISTONE H4 |
AT3G48750 | PredictedSynthetic Rescue | FSW = 0.0409
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G75950 | Predictedtwo hybrid | FSW = 0.0059
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G04390 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.0430
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G13320 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0219
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G42500 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernsynthetic growth defectSynthetic Rescueinteraction prediction | FSW = 0.0636
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernsynthetic growth defectSynthetic Rescue | FSW = 0.0532
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G24510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0702
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT5G19330 | PredictedPhenotypic Enhancement | FSW = 0.0209
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT1G57720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0869
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G20890 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0593
| Unknown | CHAPERONIN PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G59950 | Predictedinteraction prediction | FSW = 0.0131
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G21700 | PredictedPhenotypic Suppression | FSW = 0.0333
| Unknown | SGP2 GTP BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G54840 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0313
| Unknown | SGP1 GTP BINDING |
AT3G02530 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0758
| Unknown | CHAPERONIN PUTATIVE |
AT3G23890 | PredictedSynthetic Rescue | FSW = 0.0349
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT2G29900 | PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | PRESENILIN FAMILY PROTEIN |
AT5G45550 | Predictedinterologs mapping | FSW = 0.0993
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT3G20050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0575
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G69960 | Predictedin vitro | FSW = 0.0820
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G48470 | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
AT1G02100 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G44120 | PredictedPhenotypic Enhancement | FSW = 0.0415
| Unknown | C2 DOMAIN-CONTAINING PROTEIN / ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G07270 | PredictedAffinity Capture-Western | FSW = 0.0189
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G78770 | PredictedSynthetic Rescue | FSW = 0.0039
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G37550 | Predictedinterologs mapping | FSW = 0.0055
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT2G37840 | Predictedbiochemical | FSW = 0.0093
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G56440 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | ATATG18D |
AT4G15475 | PredictedSynthetic Lethality | FSW = 0.0324
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT2G22480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1407
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | HISTONE H4 |
AT5G26360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0556
| Unknown | CHAPERONIN PUTATIVE |
AT5G53000 | PredictedPhenotypic Enhancement | FSW = 0.1758
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G55090 | PredictedPhenotypic Suppression | FSW = 0.0119
| Unknown | MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G30510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0188
| Unknown | ATATG18B |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G19050 | Predictedinterologs mapping | FSW = 0.0993
| Unknown | ATP BINDING / PROTEIN BINDING |
AT5G50900 | PredictedPhenotypic Enhancement | FSW = 0.0353
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT1G53570 | PredictedPhenotypic Suppression | FSW = 0.0988
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G01720 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0497
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT1G51690 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0800
| Unknown | ATB ALPHA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454