Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G53570 - ( MAP3KA ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
20 Proteins interacs with AT1G53570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0107
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G63880 | Predictedtwo hybrid | FSW = 0.0199
| Unknown | VPS201 |
AT3G21700 | PredictedSynthetic Rescueinterologs mappinginterologs mappinginterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternColocalizationinterologs mappingSynthetic LethalitySynthetic Rescue | FSW = 0.0864
| Unknown | SGP2 GTP BINDING |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0768
| Unknown | SGP1 GTP BINDING |
AT1G17470 | PredictedAffinity Capture-MS | FSW = 0.0535
| Unknown | ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) GTP BINDING / GTPASE |
AT2G44140 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | AUTOPHAGY 4A (APG4A) |
AT1G16280 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0109
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G19420 | Predictedinterologs mappinginterologs mappingbiochemicalbiochemicalbiochemicalinterologs mappingsynthetic growth defectSynthetic Rescueinteraction prediction | FSW = 0.0874
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT4G19050 | PredictedbiochemicalSynthetic Lethalityinteraction prediction | FSW = 0.0882
| Unknown | ATP BINDING / PROTEIN BINDING |
AT2G04660 | Predictedinterologs mapping | FSW = 0.0155
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G35980 | Predictedinterologs mapping | FSW = 0.0610
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G07270 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0394
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT3G47460 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | ATSMC2 TRANSPORTER |
AT1G17720 | PredictedPhenotypic Suppression | FSW = 0.0988
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0343
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G62600 | PredictedSynthetic Rescue | FSW = 0.0500
| Unknown | TRANSPORTIN-SR-RELATED |
AT1G02690 | PredictedSynthetic Rescue | FSW = 0.0125
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G16950 | PredictedSynthetic Rescue | FSW = 0.0264
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT1G59580 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT3G59950 | Predictedinteraction prediction | FSW = 0.0775
| Unknown | AUTOPHAGY 4B (APG4B) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454