Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19420 - ( ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) phosphatase/ protein tyrosine phosphatase )
38 Proteins interacs with AT3G19420Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G50370 | PredictedAffinity Capture-MS | FSW = 0.0876
| Unknown | ADENYLATE KINASE PUTATIVE |
AT5G63400 | Predictedinteraction prediction | FSW = 0.0121
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT2G33040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0126
| Unknown | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT5G13450 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0064
| Unknown | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT3G55200 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G00100 | Predictedtwo hybrid | FSW = 0.0037
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G15680 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | BINDING |
AT1G70310 | Predictedinteraction prediction | FSW = 0.0536
| Unknown | SPDS2 (SPERMIDINE SYNTHASE 2) SPERMIDINE SYNTHASE |
AT2G40360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G53180 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G21700 | PredictedSynthetic Rescueinterologs mappingAffinity Capture-Westerninterologs mappingReconstituted ComplexSynthetic LethalitySynthetic Rescuetwo hybrid | FSW = 0.0288
| Unknown | SGP2 GTP BINDING |
AT3G13940 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0283
| Unknown | SGP1 GTP BINDING |
AT3G25940 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0343
| Unknown | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
AT4G20810 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT3G13920 | PredictedPhenotypic Suppression | FSW = 0.0175
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G20080 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0250
| Unknown | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
AT1G14610 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0300
| Unknown | TWN2 (TWIN 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / VALINE-TRNA LIGASE |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G37560 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0122
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT1G50030 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0281
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT2G44420 | Predictedtwo hybrid | FSW = 0.0451
| Unknown | PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE FAMILY PROTEIN |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0130
| Unknown | DGCR14-RELATED |
AT3G63000 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | NPL41 (NPL4-LIKE PROTEIN 1) |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0825
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G13840 | Predictedin vitro | FSW = 0.0226
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT1G55810 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G23820 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | SPDS1 (SPERMIDINE SYNTHASE 1) SPERMIDINE SYNTHASE |
AT1G16980 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G20575 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0111
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G09020 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0222
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G53570 | Predictedinterologs mappinginterologs mappingbiochemicalbiochemicalbiochemicalinterologs mappingsynthetic growth defectSynthetic Rescueinteraction prediction | FSW = 0.0874
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G11920 | PredictedbiochemicalSynthetic Lethalityinteraction prediction | FSW = 0.0248
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT1G07270 | Predictedinterologs mappingPhenotypic Enhancementsynthetic growth defect | FSW = 0.0344
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT5G16270 | PredictedSynthetic Rescue | FSW = 0.0126
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT2G39840 | Predictedinteraction prediction | FSW = 0.0225
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G78580 | Predictedinteraction prediction | FSW = 0.0451
| Unknown | ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454