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AT4G00100 - ( ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) structural constituent of ribosome )

103 Proteins interacs with AT4G00100

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.5138	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.3317	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.4068	Class C: plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.4088	Class C: plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.4774	Class C: plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3001	Class C: plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.4836	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G60770	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3529	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S13 (RPS13A)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.5498	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.5073	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.2353	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.4151	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.4004	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.4551	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT2G36160	Predicted Affinity Capture-MS	FSW = 0.1016	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14A)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.3620	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.4828	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G22780	Predicted Affinity Capture-MS	FSW = 0.0316	Class C: plasma membrane	PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.5293	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.3513	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.4582	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.4851	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.0863	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.4030	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.3300	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G73180	Predicted Affinity Capture-MS	FSW = 0.0925	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.4970	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.3791	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.4048	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G11420	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0289	Class C: plasma membrane	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4064	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT4G35020	Predicted Phenotypic Suppression	FSW = 0.0115	Class C: plasma membrane	ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.5593	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.4056	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2860	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4467	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.2534	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT3G57000	Predicted Affinity Capture-MS	FSW = 0.3775	Class C: nucleus	NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.5696	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.3825	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.3252	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G21540	Predicted Affinity Capture-MS	FSW = 0.2810	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G63810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3540	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT3G56990	Predicted Affinity Capture-MS	FSW = 0.2731	Class C: nucleus	EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G05060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2409	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860	Predicted Affinity Capture-MS	FSW = 0.3306	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310	Predicted Affinity Capture-MS	FSW = 0.1712	Class C: nucleus	RNA HELICASE PUTATIVE
AT3G18130	Predicted Affinity Capture-MS	FSW = 0.1425	Class C: nucleus	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT4G34390	Predicted two hybrid	FSW = 0.0049	Class C: nucleus	XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT4G05410	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3346	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G66540	Predicted Affinity Capture-MS	FSW = 0.3884	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.3537	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.4289	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G25780	Predicted Affinity Capture-MS	FSW = 0.0593	Unknown	EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3420	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G06530	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2966	Unknown	BINDING
AT2G33340	Predicted Co-purification	FSW = 0.0431	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G05620	Predicted two hybrid	FSW = 0.0043	Unknown	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT4G23900	Predicted Affinity Capture-MS	FSW = 0.0552	Unknown	NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.3784	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT5G52650	Predicted Affinity Capture-MS	FSW = 0.1108	Unknown	40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4026	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G10090	Predicted Affinity Capture-MS	FSW = 0.0879	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.3470	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.3899	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.1984	Unknown	GLYCINE-RICH PROTEIN
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.4684	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0476	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G47990	Predicted Affinity Capture-MS	FSW = 0.2864	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4910	Unknown	UNKNOWN PROTEIN
AT3G19420	Predicted two hybrid	FSW = 0.0037	Unknown	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE
AT1G18660	Predicted two hybrid two hybrid	FSW = 0.0519	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G05830	Predicted two hybrid two hybrid	FSW = 0.0593	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT5G58575	Predicted two hybrid two hybrid	FSW = 0.0258	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT5G03790	Predicted two hybrid	FSW = 0.0198	Unknown	HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G06720	Predicted Affinity Capture-MS	FSW = 0.2849	Unknown	INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G22240	Predicted Affinity Capture-MS	FSW = 0.1701	Unknown	APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT2G17250	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3651	Unknown	EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G34357	Predicted Affinity Capture-MS	FSW = 0.3874	Unknown	BINDING
AT2G47420	Predicted Affinity Capture-MS	FSW = 0.2899	Unknown	DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G10530	Predicted Affinity Capture-MS	FSW = 0.2529	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13230	Predicted Affinity Capture-MS	FSW = 0.2498	Unknown	RNA BINDING
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.4433	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.3861	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2278	Unknown	KRR1 FAMILY PROTEIN
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3446	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G51270	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2264	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.3935	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G15440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2552	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4760	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2506	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G69070	Predicted Affinity Capture-MS	FSW = 0.3561	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT2G16950	Predicted Affinity Capture-MS	FSW = 0.0473	Unknown	TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G11450	Predicted Affinity Capture-MS	FSW = 0.1179	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0630	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G30991	Predicted Affinity Capture-MS	FSW = 0.3655	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT5G08420	Predicted Affinity Capture-MS	FSW = 0.3792	Unknown	RNA BINDING
AT5G10270	Predicted Affinity Capture-MS	FSW = 0.0113	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0605	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT4G28200	Predicted Affinity Capture-MS	FSW = 0.3515	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450	Predicted Affinity Capture-MS	FSW = 0.2982	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G15750	Predicted Affinity Capture-MS	FSW = 0.3226	Unknown	RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN
AT5G63190	Predicted Affinity Capture-MS in vitro two hybrid	FSW = 0.0210	Unknown	MA3 DOMAIN-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT4G00100 - ( ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) structural constituent of ribosome )

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