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AT1G33140 - ( PGY2 (PIGGYBACK2) structural constituent of ribosome )

76 Proteins interacs with AT1G33140

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G35750	Experimental two hybrid	FSW = 0.0039	Unknown	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.3391	Class C: vacuole plastid	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT1G33120	Predicted Gene neighbors method Phylogenetic profile method	FSW = 0.0789	Class C: vacuole plastid	60S RIBOSOMAL PROTEIN L9 (RPL90B)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.4852	Class C: vacuole plastid	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2557	Class C: vacuole plastid	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.5052	Class C: vacuole plastid	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2448	Class C: vacuole plastid	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.2781	Class C: vacuole plastid	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3168	Class C: vacuole plastid	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.4973	Class C: vacuole	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.5112	Class C: vacuole	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3223	Class C: vacuole	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G36130	Predicted Affinity Capture-Western Phenotypic Enhancement interologs mapping	FSW = 0.0655	Class C: vacuole	60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.3852	Class C: vacuole	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.3202	Class C: vacuole	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G45200	Predicted Affinity Capture-Western Phenotypic Suppression Affinity Capture-Western	FSW = 0.0433	Class C: vacuole	GOS12 (GOLGI SNARE 12) SNARE BINDING
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.1898	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G62870	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0237	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G14800	Predicted Affinity Capture-MS	FSW = 0.0152	Class C: vacuole	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2522	Class C: plastid	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.4829	Class C: plastid	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.4045	Class C: plastid	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT3G45770	Predicted Synthetic Rescue	FSW = 0.0327	Class C: plastid	OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3290	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT4G25910	Predicted Reconstituted Complex	FSW = 0.0753	Class C: plastid	NFU3 STRUCTURAL MOLECULE
AT3G57050	Predicted Phenotypic Enhancement Phenotypic Enhancement Synthetic Lethality	FSW = 0.2117	Class C: plastid	CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE
AT5G03650	Predicted Synthetic Lethality	FSW = 0.0321	Class C: plastid	SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3646	Unknown	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT2G42590	Predicted Synthetic Rescue	FSW = 0.0098	Unknown	GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.4177	Unknown	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.2152	Unknown	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.4085	Unknown	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.3537	Unknown	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G10450	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.0376	Unknown	60S RIBOSOMAL PROTEIN L9 (RPL90D)
AT5G52640	Predicted Synthetic Lethality	FSW = 0.0186	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G47510	Predicted Synthetic Lethality	FSW = 0.0313	Unknown	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G34580	Predicted Synthetic Lethality	FSW = 0.0113	Unknown	COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.4638	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.3552	Unknown	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT5G03540	Predicted Reconstituted Complex	FSW = 0.0793	Unknown	ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.0918	Unknown	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.4955	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.3823	Unknown	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4129	Unknown	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.3049	Unknown	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G23460	Predicted Affinity Capture-MS	FSW = 0.0560	Unknown	BETA-ADAPTIN PUTATIVE
AT3G55620	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1429	Unknown	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4006	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G21540	Predicted interologs mapping	FSW = 0.0764	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G13445	Predicted Affinity Capture-MS Reconstituted Complex	FSW = 0.0260	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.4559	Unknown	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT3G18600	Predicted Synthetic Lethality	FSW = 0.0854	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G01020	Predicted Reconstituted Complex Reconstituted Complex	FSW = 0.0753	Unknown	ARV1
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.3918	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT5G10330	Predicted interologs mapping	FSW = 0.0200	Unknown	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.2356	Unknown	GLYCINE-RICH PROTEIN
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.2612	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.1682	Unknown	GTP-BINDING PROTEIN-RELATED
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.4014	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.3709	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G25260	Predicted Affinity Capture-MS	FSW = 0.0426	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G49520	Predicted Affinity Capture-Western synthetic growth defect	FSW = 0.0689	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G55810	Predicted two hybrid two hybrid Synthetic Lethality	FSW = 0.0311	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.3982	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT2G22530	Predicted Synthetic Lethality	FSW = 0.0226	Unknown	CATALYTIC/ TRANSFERASE
AT3G14090	Predicted Synthetic Lethality	FSW = 0.0075	Unknown	ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.3791	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G44190	Predicted Affinity Capture-Western synthetic growth defect Reconstituted Complex	FSW = 0.1642	Unknown	PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN
AT4G17510	Predicted Affinity Capture-Western Affinity Capture-Western two hybrid	FSW = 0.0972	Unknown	UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE
AT5G43340	Predicted Reconstituted Complex Reconstituted Complex	FSW = 0.1018	Unknown	PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.4818	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.3957	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.4150	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G22140	Predicted Synthetic Lethality	FSW = 0.0217	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G26230	Predicted Affinity Capture-MS	FSW = 0.0478	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.1447	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G33140 - ( PGY2 (PIGGYBACK2) structural constituent of ribosome )

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