Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G45770 - ( oxidoreductase zinc-binding dehydrogenase family protein )
46 Proteins interacs with AT3G45770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33140 | PredictedSynthetic Rescue | FSW = 0.0327
| Class C:plastid | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G57050 | PredictedSynthetic Rescue | FSW = 0.0469
| Class C:plastid | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT5G46110 | Predictedtwo hybrid | FSW = 0.1552
| Class C:plastid | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G42590 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.3789
| Class C:nucleus | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G76300 | Predictedtwo hybrid | FSW = 0.0976
| Class C:nucleus | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT2G20490 | Predictedtwo hybrid | FSW = 0.1012
| Class C:nucleus | NOP10 RNA BINDING |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0127
| Class C:nucleus | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G10060 | PredictedSynthetic Lethality | FSW = 0.3396
| Class C:mitochondrion | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G70190 | Predictedtwo hybrid | FSW = 0.2005
| Class C:mitochondrion | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT4G36130 | PredictedPhenotypic Enhancement | FSW = 0.1012
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT4G36750 | Predictedtwo hybrid | FSW = 0.1414
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0239
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G07100 | PredictedAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.1225
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT4G39180 | Predictedtwo hybrid | FSW = 0.1430
| Unknown | SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G26340 | Predictedtwo hybrid | FSW = 0.0532
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G12110 | Predictedtwo hybrid | FSW = 0.0458
| Unknown | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT3G54840 | Predictedtwo hybrid | FSW = 0.0327
| Unknown | ARA6 GTP BINDING / GTPASE |
AT5G23320 | PredictedPhenotypic Enhancement | FSW = 0.0421
| Unknown | ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) CARBOXYL-O-METHYLTRANSFERASE/ PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT4G30800 | Predictedtwo hybrid | FSW = 0.0031
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT4G15900 | Predictedtwo hybrid | FSW = 0.1445
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G11800 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT2G32730 | Predictedtwo hybridtwo hybrid | FSW = 0.0224
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G61670 | PredictedPhenotypic Suppression | FSW = 0.0605
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT2G23070 | PredictedPhenotypic Suppression | FSW = 0.0401
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G18830 | Predictedtwo hybrid | FSW = 0.0541
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G29800 | Predictedtwo hybrid | FSW = 0.0570
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G71530 | Predictedtwo hybrid | FSW = 0.2419
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0196
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G19160 | Predictedtwo hybrid | FSW = 0.0836
| Unknown | UNKNOWN PROTEIN |
AT2G46650 | Predictedtwo hybrid | FSW = 0.2623
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G01090 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G05040 | Predictedtwo hybrid | FSW = 0.1512
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G19670 | Predictedtwo hybrid | FSW = 0.0279
| Unknown | PROTEIN BINDING |
AT3G25597 | PredictedSynthetic Lethality | FSW = 0.0192
| Unknown | UNKNOWN PROTEIN |
AT3G61210 | Predictedtwo hybrid | FSW = 0.2196
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0209
| Unknown | UNKNOWN PROTEIN |
AT4G30820 | Predictedtwo hybrid | FSW = 0.1949
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G01770 | PredictedReconstituted Complex | FSW = 0.0234
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G19090 | Predictedtwo hybrid | FSW = 0.1526
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G24840 | PredictedSynthetic Rescue | FSW = 0.0298
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G38110 | Predictedtwo hybrid | FSW = 0.2233
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G38290 | Predictedtwo hybrid | FSW = 0.3130
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G63650 | Predictedtwo hybrid | FSW = 0.1512
| Unknown | SNRK25 (SNF1-RELATED PROTEIN KINASE 25) KINASE |
AT3G47610 | PredictedAffinity Capture-Western | FSW = 0.0246
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G15770 | Predictedinteraction prediction | FSW = 0.0091
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT1G80670 | Predictedinteraction prediction | FSW = 0.0131
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454