Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19160 - ( unknown protein )
17 Proteins interacs with AT2G19160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G15880 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | GOS11 (GOLGI SNARE 11) SNARE BINDING |
AT1G65540 | PredictedAffinity Capture-MS | FSW = 0.1818
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G45770 | Predictedtwo hybrid | FSW = 0.0836
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT3G17430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0896
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT2G15430 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0282
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G10060 | Predictedtwo hybrid | FSW = 0.0612
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G01020 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0550
| Unknown | ARV1 |
AT4G15900 | PredictedPhenotypic Enhancement | FSW = 0.0526
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G07340 | PredictedAffinity Capture-MStwo hybridsynthetic growth defectAffinity Capture-MSAffinity Capture-Western | FSW = 0.1790
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0477
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.0674
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G02630 | Predictedco-fractionationCo-fractionation | FSW = 0.1322
| Unknown | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8) |
AT2G01070 | PredictedAffinity Capture-Western | FSW = 0.1077
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT3G12490 | PredictedAffinity Capture-MS | FSW = 0.1060
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G17630 | PredictedAffinity Capture-MS | FSW = 0.1739
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0750
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G61210 | Predictedtwo hybrid | FSW = 0.2306
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454