Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G61210 - ( embryo-abundant protein-related )
26 Proteins interacs with AT3G61210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G08710 | Predictedtwo hybrid | FSW = 0.0554
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G44170 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0516
| Unknown | UNKNOWN PROTEIN |
AT3G45770 | Predictedtwo hybrid | FSW = 0.2196
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G55920 | PredictedPhenotypic Suppression | FSW = 0.0424
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT2G42590 | Predictedtwo hybrid | FSW = 0.1047
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G39160 | Predictedtwo hybrid | FSW = 0.1201
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G41380 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0313
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G10060 | Predictedtwo hybrid | FSW = 0.1200
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT1G70190 | Predictedtwo hybrid | FSW = 0.3538
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT4G15900 | Predictedtwo hybrid | FSW = 0.1567
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0901
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G71530 | Predictedtwo hybrid | FSW = 0.3241
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G23070 | PredictedPhenotypic Suppression | FSW = 0.0277
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G46650 | Predictedtwo hybrid | FSW = 0.3902
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT1G29230 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2438
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0641
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G19160 | Predictedtwo hybrid | FSW = 0.2306
| Unknown | UNKNOWN PROTEIN |
AT3G62930 | Predictedinterologs mapping | FSW = 0.0162
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G25960 | Predictedinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.1441
| Unknown | PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G52210 | Predictedtwo hybrid | FSW = 0.0206
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G63650 | Predictedtwo hybrid | FSW = 0.0983
| Unknown | SNRK25 (SNF1-RELATED PROTEIN KINASE 25) KINASE |
AT4G22530 | PredictedGene fusion methodCo-expression | FSW = 0.1500
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G54150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0230
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G10830 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0462
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454