Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G42590 - ( GRF9 (GENERAL REGULATORY FACTOR 9) calcium ion binding / protein binding / protein phosphorylated amino acid binding )
76 Proteins interacs with AT2G42590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0615
| Class A:plasma membraneperoxisomenucleuscytosolClass B:vacuolecytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G37130 | Experimentaltwo hybrid | FSW = 0.1434
| Class A:plasma membraneClass B:vacuoleperoxisomenucleuscytosolClass D:unclear (p = 0.09)cytosol (p = 0.67) | NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE |
AT3G02520 | Experimental | FSW = 0.0766
| Class A:plasma membraneClass B:plastidperoxisomenucleuscytosolClass D:cytosol (p = 0.67) | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G16050 | Experimental | FSW = 0.2971
| Class A:plasma membraneClass B:peroxisomenucleuscytosolClass D:cytosol (p = 0.67) | GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G15840 | Experimental | FSW = 0.0136
| Class A:nucleusClass B:plasma membraneperoxisomecytosol | CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G54770 | Experimental | FSW = 0.0045
| Class B:plastidplasma membraneperoxisomenucleusmitochondrioncytosolClass D:cytosol (p = 0.67) | THI1 PROTEIN HOMODIMERIZATION |
AT5G10450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0700
| Class C:plasma membraneperoxisomenucleuscytosol | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G38480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1340
| Class C:plasma membraneperoxisomecytosol | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35160 | PredictedPhylogenetic profile method | FSW = 0.1252
| Class C:plasma membranenucleuscytosol | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G09000 | PredictedPhylogenetic profile method | FSW = 0.2534
| Class C:plasma membranenucleus | 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1) |
AT3G05560 | Predictedtwo hybrid | FSW = 0.0259
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT4G39180 | Predictedtwo hybrid | FSW = 0.0678
| Class C:plasma membranecytosol | SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER |
AT4G36750 | Predictedtwo hybrid | FSW = 0.1079
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
AT4G32410 | Predictedtwo hybrid | FSW = 0.0471
| Class C:plasma membrane | CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G22300 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1138
| Class C:plasma membrane | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G38290 | Predictedtwo hybrid | FSW = 0.0250
| Class C:plasma membrane | ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER |
AT5G26340 | Predictedtwo hybrid | FSW = 0.0414
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G12110 | Predictedtwo hybrid | FSW = 0.0193
| Class C:plasma membrane | NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER |
AT3G45770 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.3789
| Class C:nucleus | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT5G65430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1216
| Class C:nucleus | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G76300 | Predictedtwo hybrid | FSW = 0.0556
| Class C:nucleus | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT1G21190 | Predictedtwo hybrid | FSW = 0.0218
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G13980 | Predictedbiochemical | FSW = 0.0102
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G33140 | PredictedSynthetic Rescue | FSW = 0.0098
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G01690 | PredictedSynthetic Lethality | FSW = 0.0122
| Unknown | BINDING |
AT5G26030 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G07100 | Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0711
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT5G61960 | Predictedtwo hybridtwo hybridSynthetic Rescueinterologs mappingAffinity Capture-Western | FSW = 0.0126
| Unknown | AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) RNA BINDING / PROTEIN BINDING |
AT2G31910 | Predictedco-fractionationCo-fractionation | FSW = 0.0096
| Unknown | ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER |
AT3G54670 | PredictedSynthetic Lethality | FSW = 0.0222
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G57050 | PredictedSynthetic Rescue | FSW = 0.0198
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT5G46110 | Predictedtwo hybrid | FSW = 0.0620
| Unknown | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G79230 | PredictedPhenotypic Suppression | FSW = 0.0450
| Unknown | MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE |
AT1G70190 | Predictedtwo hybrid | FSW = 0.1108
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT1G28490 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT3G54840 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G15900 | Predictedtwo hybrid | FSW = 0.0984
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G28030 | PredictedPhenotypic Enhancement | FSW = 0.0219
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT1G61670 | PredictedPhenotypic Suppression | FSW = 0.0294
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT2G23070 | PredictedPhenotypic Suppression | FSW = 0.0462
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.0104
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G15440 | PredictedPhenotypic Suppression | FSW = 0.0207
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G29230 | Predictedtwo hybrid | FSW = 0.1667
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G29800 | Predictedtwo hybrid | FSW = 0.0359
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT1G66950 | Predictedtwo hybrid | FSW = 0.0642
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G68390 | Predictedtwo hybrid | FSW = 0.0897
| Unknown | UNKNOWN PROTEIN |
AT1G71530 | Predictedtwo hybrid | FSW = 0.1805
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G36260 | PredictedSynthetic Lethality | FSW = 0.0282
| Unknown | IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE |
AT2G46650 | Predictedtwo hybrid | FSW = 0.2159
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G05040 | Predictedtwo hybrid | FSW = 0.0554
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G18860 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G51110 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G61210 | Predictedtwo hybrid | FSW = 0.1047
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G04695 | Predictedinterologs mapping | FSW = 0.0210
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G24040 | Predictedtwo hybrid | FSW = 0.0321
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT4G30820 | Predictedtwo hybrid | FSW = 0.1277
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G06360 | Predictedtwo hybrid | FSW = 0.0100
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT5G15070 | Predictedtwo hybrid | FSW = 0.0054
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G16040 | Predictedtwo hybrid | FSW = 0.0041
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G19090 | Predictedtwo hybrid | FSW = 0.1000
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G24840 | PredictedSynthetic Rescue | FSW = 0.0368
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G38110 | Predictedtwo hybrid | FSW = 0.1836
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G38290 | Predictedtwo hybrid | FSW = 0.2574
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G57480 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G16840 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G27440 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G32490 | Predictedsynthetic growth defect | FSW = 0.0188
| Unknown | ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G78770 | Predictedinterologs mapping | FSW = 0.0245
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G01490 | PredictedColocalizationAffinity Capture-WesternReconstituted Complex | FSW = 0.0126
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G55220 | Predictedsynthetic growth defect | FSW = 0.0139
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G31770 | Predictedsynthetic growth defect | FSW = 0.0090
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT5G58690 | PredictedPhenotypic Enhancementtwo hybridAffinity Capture-Western | FSW = 0.0141
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT5G43810 | PredictedAffinity Capture-Western | FSW = 0.0132
| Unknown | ZLL (ZWILLE) TRANSLATION INITIATION FACTOR |
AT1G26480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1878
| Unknown | GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G34760 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2086
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G78220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3077
| Unknown | GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454