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AT2G42590 - ( GRF9 (GENERAL REGULATORY FACTOR 9) calcium ion binding / protein binding / protein phosphorylated amino acid binding )

76 Proteins interacs with AT2G42590

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G78300	Experimental	FSW = 0.0615	Class A: plasma membrane peroxisome nucleus cytosol Class B: vacuole cytoskeleton Class D: cytosol (p = 0.67)	GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G37130	Experimental two hybrid	FSW = 0.1434	Class A: plasma membrane Class B: vacuole peroxisome nucleus cytosol Class D: unclear (p = 0.09) cytosol (p = 0.67)	NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE
AT3G02520	Experimental	FSW = 0.0766	Class A: plasma membrane Class B: plastid peroxisome nucleus cytosol Class D: cytosol (p = 0.67)	GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G16050	Experimental	FSW = 0.2971	Class A: plasma membrane Class B: peroxisome nucleus cytosol Class D: cytosol (p = 0.67)	GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G15840	Experimental	FSW = 0.0136	Class A: nucleus Class B: plasma membrane peroxisome cytosol	CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G54770	Experimental	FSW = 0.0045	Class B: plastid plasma membrane peroxisome nucleus mitochondrion cytosol Class D: cytosol (p = 0.67)	THI1 PROTEIN HOMODIMERIZATION
AT5G10450	Predicted Phylogenetic profile method Co-expression	FSW = 0.0700	Class C: plasma membrane peroxisome nucleus cytosol	GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G38480	Predicted Phylogenetic profile method Co-expression	FSW = 0.1340	Class C: plasma membrane peroxisome cytosol	GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35160	Predicted Phylogenetic profile method	FSW = 0.1252	Class C: plasma membrane nucleus cytosol	GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G09000	Predicted Phylogenetic profile method	FSW = 0.2534	Class C: plasma membrane nucleus	14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1)
AT3G05560	Predicted two hybrid	FSW = 0.0259	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT4G39180	Predicted two hybrid	FSW = 0.0678	Class C: plasma membrane cytosol	SEC14 PHOSPHATIDYLINOSITOL TRANSPORTER
AT4G36750	Predicted two hybrid	FSW = 0.1079	Class C: plasma membrane	QUINONE REDUCTASE FAMILY PROTEIN
AT4G32410	Predicted two hybrid	FSW = 0.0471	Class C: plasma membrane	CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G22300	Predicted Phylogenetic profile method Co-expression	FSW = 0.1138	Class C: plasma membrane	GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G38290	Predicted two hybrid	FSW = 0.0250	Class C: plasma membrane	ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER
AT5G26340	Predicted two hybrid	FSW = 0.0414	Class C: plasma membrane	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G12110	Predicted two hybrid	FSW = 0.0193	Class C: plasma membrane	NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT3G45770	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.3789	Class C: nucleus	OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT5G65430	Predicted Phylogenetic profile method Co-expression	FSW = 0.1216	Class C: nucleus	GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G76300	Predicted two hybrid	FSW = 0.0556	Class C: nucleus	SMD3 (SNRNP CORE PROTEIN SMD3)
AT1G21190	Predicted two hybrid	FSW = 0.0218	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G13980	Predicted biochemical	FSW = 0.0102	Class C: nucleus	AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT1G33140	Predicted Synthetic Rescue	FSW = 0.0098	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G01690	Predicted Synthetic Lethality	FSW = 0.0122	Unknown	BINDING
AT5G26030	Predicted two hybrid	FSW = 0.0191	Unknown	FC1 (FERROCHELATASE 1) FERROCHELATASE
AT3G07100	Predicted two hybrid Phenotypic Enhancement Affinity Capture-Western	FSW = 0.0711	Unknown	PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT5G61960	Predicted two hybrid two hybrid Synthetic Rescue interologs mapping Affinity Capture-Western	FSW = 0.0126	Unknown	AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) RNA BINDING / PROTEIN BINDING
AT2G31910	Predicted co-fractionation Co-fractionation	FSW = 0.0096	Unknown	ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER
AT3G54670	Predicted Synthetic Lethality	FSW = 0.0222	Unknown	TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT3G57050	Predicted Synthetic Rescue	FSW = 0.0198	Unknown	CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE
AT5G46110	Predicted two hybrid	FSW = 0.0620	Unknown	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT1G79230	Predicted Phenotypic Suppression	FSW = 0.0450	Unknown	MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE
AT1G70190	Predicted two hybrid	FSW = 0.1108	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT1G28490	Predicted two hybrid	FSW = 0.0049	Unknown	SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT3G54840	Predicted two hybrid	FSW = 0.0213	Unknown	ARA6 GTP BINDING / GTPASE
AT4G15900	Predicted two hybrid	FSW = 0.0984	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G28030	Predicted Phenotypic Enhancement	FSW = 0.0219	Unknown	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT1G61670	Predicted Phenotypic Suppression	FSW = 0.0294	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT2G23070	Predicted Phenotypic Suppression	FSW = 0.0462	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G11510	Predicted synthetic growth defect	FSW = 0.0104	Unknown	DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G15440	Predicted Phenotypic Suppression	FSW = 0.0207	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G29230	Predicted two hybrid	FSW = 0.1667	Unknown	CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G29800	Predicted two hybrid	FSW = 0.0359	Unknown	PHOSPHOINOSITIDE BINDING / ZINC ION BINDING
AT1G66950	Predicted two hybrid	FSW = 0.0642	Unknown	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G68390	Predicted two hybrid	FSW = 0.0897	Unknown	UNKNOWN PROTEIN
AT1G71530	Predicted two hybrid	FSW = 0.1805	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT2G36260	Predicted Synthetic Lethality	FSW = 0.0282	Unknown	IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE
AT2G46650	Predicted two hybrid	FSW = 0.2159	Unknown	CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING
AT3G05040	Predicted two hybrid	FSW = 0.0554	Unknown	HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER
AT3G18860	Predicted two hybrid	FSW = 0.0127	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G51110	Predicted two hybrid	FSW = 0.0132	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G61210	Predicted two hybrid	FSW = 0.1047	Unknown	EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G04695	Predicted interologs mapping	FSW = 0.0210	Unknown	CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G24040	Predicted two hybrid	FSW = 0.0321	Unknown	TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G30820	Predicted two hybrid	FSW = 0.1277	Unknown	CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED
AT5G06360	Predicted two hybrid	FSW = 0.0100	Unknown	RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G15070	Predicted two hybrid	FSW = 0.0054	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G16040	Predicted two hybrid	FSW = 0.0041	Unknown	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G19090	Predicted two hybrid	FSW = 0.1000	Unknown	HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN
AT5G24840	Predicted Synthetic Rescue	FSW = 0.0368	Unknown	TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G38110	Predicted two hybrid	FSW = 0.1836	Unknown	ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G38290	Predicted two hybrid	FSW = 0.2574	Unknown	PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT5G57480	Predicted Phenotypic Enhancement	FSW = 0.0376	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT3G16840	Predicted Affinity Capture-MS	FSW = 0.0116	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G27440	Predicted Affinity Capture-MS	FSW = 0.0509	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G32490	Predicted synthetic growth defect	FSW = 0.0188	Unknown	ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G78770	Predicted interologs mapping	FSW = 0.0245	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT3G01490	Predicted Colocalization Affinity Capture-Western Reconstituted Complex	FSW = 0.0126	Unknown	PROTEIN KINASE PUTATIVE
AT3G55220	Predicted synthetic growth defect	FSW = 0.0139	Unknown	SPLICING FACTOR PUTATIVE
AT4G31770	Predicted synthetic growth defect	FSW = 0.0090	Unknown	CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT5G58690	Predicted Phenotypic Enhancement two hybrid Affinity Capture-Western	FSW = 0.0141	Unknown	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT5G43810	Predicted Affinity Capture-Western	FSW = 0.0132	Unknown	ZLL (ZWILLE) TRANSLATION INITIATION FACTOR
AT1G26480	Predicted Phylogenetic profile method Co-expression	FSW = 0.1878	Unknown	GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G34760	Predicted Phylogenetic profile method Co-expression	FSW = 0.2086	Unknown	GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G78220	Predicted Phylogenetic profile method Co-expression	FSW = 0.3077	Unknown	GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G42590 - ( GRF9 (GENERAL REGULATORY FACTOR 9) calcium ion binding / protein binding / protein phosphorylated amino acid binding )

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