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AT5G24840 - ( tRNA (guanine-N7-)-methyltransferase )

114 Proteins interacs with AT5G24840

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G38510	Predicted Synthetic Lethality	FSW = 0.0113	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE
AT5G09590	Predicted Phenotypic Enhancement	FSW = 0.1136	Unknown	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G07680	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Reconstituted Complex	FSW = 0.0674	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT5G24770	Predicted Affinity Capture-MS	FSW = 0.1372	Unknown	VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE
AT4G01840	Predicted interologs mapping synthetic growth defect	FSW = 0.0168	Unknown	KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT5G55630	Predicted Affinity Capture-MS	FSW = 0.0145	Unknown	ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT3G62870	Predicted two hybrid	FSW = 0.0464	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G38890	Predicted synthetic growth defect	FSW = 0.0384	Unknown	DIHYDROURIDINE SYNTHASE FAMILY PROTEIN
AT4G14800	Predicted two hybrid two hybrid two hybrid two hybrid Synthetic Lethality synthetic growth defect biochemical Co-purification co-fractionation Co-fractionation	FSW = 0.0323	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G28390	Predicted Dosage Growth Defect	FSW = 0.0163	Unknown	AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING
AT5G13450	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0639	Unknown	ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT5G20020	Predicted Affinity Capture-MS	FSW = 0.0078	Unknown	RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G07890	Predicted Synthetic Lethality	FSW = 0.1071	Unknown	APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT5G09660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Affinity Capture-Western	FSW = 0.0363	Unknown	PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G45770	Predicted Synthetic Rescue	FSW = 0.0298	Unknown	OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT5G42130	Predicted two hybrid two hybrid two hybrid Reconstituted Complex Synthetic Rescue biochemical Phenotypic Suppression Synthetic Lethality Phenotypic Enhancement Affinity Capture-Western	FSW = 0.0417	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G15450	Predicted Phenotypic Enhancement	FSW = 0.0531	Unknown	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G80190	Predicted Affinity Capture-MS	FSW = 0.0463	Unknown	PSF1 (PARTNER OF SLD FIVE 1)
AT2G42590	Predicted Synthetic Rescue	FSW = 0.0368	Unknown	GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G60540	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1986	Unknown	PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT1G02780	Predicted Affinity Capture-MS	FSW = 0.0657	Unknown	EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G21540	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0477	Unknown	SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT3G45780	Predicted Affinity Capture-Western	FSW = 0.0056	Unknown	PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT1G75170	Predicted Synthetic Lethality	FSW = 0.0248	Unknown	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G52640	Predicted synthetic growth defect	FSW = 0.0107	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G23900	Predicted Synthetic Lethality	FSW = 0.0104	Unknown	60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT1G04750	Predicted Affinity Capture-MS	FSW = 0.0983	Unknown	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G03540	Predicted Synthetic Lethality	FSW = 0.0331	Unknown	ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING
AT4G02050	Predicted Reconstituted Complex	FSW = 0.0305	Unknown	SUGAR TRANSPORTER PUTATIVE
AT1G68100	Predicted Synthetic Lethality	FSW = 0.0339	Unknown	IAR1 (IAA-ALANINE RESISTANT 1) METAL ION TRANSMEMBRANE TRANSPORTER
AT1G20760	Predicted Synthetic Lethality	FSW = 0.0073	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT4G02450	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1200	Unknown	GLYCINE-RICH PROTEIN
AT5G03860	Predicted Reconstituted Complex Reconstituted Complex Reconstituted Complex Affinity Capture-Western	FSW = 0.0085	Unknown	MLS (MALATE SYNTHASE) MALATE SYNTHASE
AT3G04820	Predicted synthetic growth defect	FSW = 0.0215	Unknown	PSEUDOURIDINE SYNTHASE
AT2G30260	Predicted Synthetic Lethality	FSW = 0.0022	Unknown	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G52250	Predicted Phenotypic Enhancement	FSW = 0.0615	Unknown	DNA BINDING / TRANSCRIPTION FACTOR
AT3G13445	Predicted Phenotypic Enhancement	FSW = 0.0365	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G35910	Predicted Synthetic Rescue	FSW = 0.0094	Unknown	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0112	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G21540	Predicted Affinity Capture-Western	FSW = 0.0302	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G76300	Predicted Synthetic Rescue	FSW = 0.0672	Unknown	SMD3 (SNRNP CORE PROTEIN SMD3)
AT5G54840	Predicted Affinity Capture-MS Synthetic Lethality	FSW = 0.0074	Unknown	SGP1 GTP BINDING
AT3G20970	Predicted Affinity Capture-MS	FSW = 0.0217	Unknown	NFU4 STRUCTURAL MOLECULE
AT1G53530	Predicted synthetic growth defect	FSW = 0.0496	Unknown	SIGNAL PEPTIDASE I FAMILY PROTEIN
AT2G47510	Predicted Affinity Capture-MS	FSW = 0.0311	Unknown	FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G30160	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1333	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G66590	Predicted synthetic growth defect synthetic growth defect Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue synthetic growth defect Affinity Capture-Western Reconstituted Complex Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Synthetic Lethality Affinity Capture-MS Co-purification Phenotypic Suppression	FSW = 0.0544	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G19980	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.1433	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G26130	Predicted Synthetic Lethality	FSW = 0.0269	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK)
AT5G23320	Predicted Synthetic Lethality	FSW = 0.0277	Unknown	ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) CARBOXYL-O-METHYLTRANSFERASE/ PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
AT3G16050	Predicted Affinity Capture-MS	FSW = 0.0258	Unknown	A37 PROTEIN HETERODIMERIZATION
AT4G39200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1391	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G62800	Predicted Phenotypic Suppression	FSW = 0.0386	Unknown	ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT2G18230	Predicted Synthetic Lethality	FSW = 0.0126	Unknown	ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT2G05840	Predicted Affinity Capture-RNA	FSW = 0.0192	Unknown	PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G19730	Predicted Phenotypic Enhancement	FSW = 0.0226	Unknown	ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT4G17190	Predicted Phenotypic Enhancement	FSW = 0.0772	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT2G03780	Predicted two hybrid two hybrid Co-expression	FSW = 0.0087	Unknown	TRANSLIN FAMILY PROTEIN
AT1G03110	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS two hybrid Co-crystal Structure interaction prediction Co-expression	FSW = 0.0787	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G07880	Predicted Synthetic Lethality	FSW = 0.0189	Unknown	ATMPK13 MAP KINASE/ KINASE
AT1G09270	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1026	Unknown	IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G09580	Predicted Synthetic Lethality	FSW = 0.0128	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G11510	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.1184	Unknown	DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G33040	Predicted Affinity Capture-Western	FSW = 0.0216	Unknown	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT1G35530	Predicted Phenotypic Suppression	FSW = 0.0122	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G55810	Predicted Reconstituted Complex	FSW = 0.0161	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G60730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0139	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G80710	Predicted Dosage Growth Defect	FSW = 0.0445	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G22400	Predicted synthetic growth defect	FSW = 0.0671	Unknown	NOL1/NOP2/SUN FAMILY PROTEIN
AT2G40930	Predicted Synthetic Lethality	FSW = 0.0127	Unknown	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE
AT2G43190	Predicted Dosage Growth Defect	FSW = 0.0247	Unknown	RIBONUCLEASE P FAMILY PROTEIN
AT3G02000	Predicted interologs mapping	FSW = 0.0744	Unknown	ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G04710	Predicted Affinity Capture-MS Reconstituted Complex Affinity Capture-MS	FSW = 0.0707	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT3G06460	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0100	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G15470	Predicted Affinity Capture-MS Affinity Capture-Western Reconstituted Complex two hybrid Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Affinity Capture-Western	FSW = 0.0694	Unknown	WD-40 REPEAT FAMILY PROTEIN
AT3G18370	Predicted two hybrid two hybrid two hybrid synthetic growth defect Synthetic Lethality Reconstituted Complex	FSW = 0.0905	Unknown	ATSYTF
AT3G27440	Predicted Phenotypic Enhancement	FSW = 0.1068	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT3G45630	Predicted Affinity Capture-Western	FSW = 0.0223	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G47940	Predicted Synthetic Lethality	FSW = 0.0082	Unknown	DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G49640	Predicted synthetic growth defect	FSW = 0.0598	Unknown	FAD BINDING / CATALYTIC/ TRNA DIHYDROURIDINE SYNTHASE
AT3G62770	Predicted Reconstituted Complex Affinity Capture-Western Reconstituted Complex interologs mapping	FSW = 0.0817	Unknown	ATATG18A
AT4G00810	Predicted Synthetic Lethality	FSW = 0.0311	Unknown	60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1B)
AT4G04695	Predicted Synthetic Lethality	FSW = 0.0582	Unknown	CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G02100	Predicted Phenotypic Enhancement	FSW = 0.0445	Unknown	LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G11755	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.1005	Unknown	LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE
AT1G15440	Predicted two hybrid two hybrid two hybrid Synthetic Lethality	FSW = 0.0702	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G55255	Predicted Affinity Capture-Western	FSW = 0.0079	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G03690	Predicted Affinity Capture-Western	FSW = 0.0163	Unknown	COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G15910	Predicted Affinity Capture-MS	FSW = 0.1268	Unknown	CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G31020	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0372	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G31260	Predicted Synthetic Lethality	FSW = 0.0928	Unknown	APG9 (AUTOPHAGY 9)
AT2G32050	Predicted Affinity Capture-MS	FSW = 0.0287	Unknown	CELL CYCLE CONTROL PROTEIN-RELATED
AT2G34250	Predicted Affinity Capture-MS	FSW = 0.0787	Unknown	PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G37420	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0998	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G42005	Predicted Phenotypic Enhancement	FSW = 0.0153	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT2G47090	Predicted Synthetic Lethality	FSW = 0.0518	Unknown	NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G47570	Predicted Phenotypic Enhancement	FSW = 0.0480	Unknown	60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT2G47760	Predicted Affinity Capture-RNA	FSW = 0.0421	Unknown	ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT2G48100	Predicted Phenotypic Enhancement	FSW = 0.0644	Unknown	EXONUCLEASE FAMILY PROTEIN
AT3G11290	Predicted Phenotypic Enhancement	FSW = 0.0608	Unknown	UNKNOWN PROTEIN
AT3G19190	Predicted Synthetic Rescue	FSW = 0.0277	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATG2 C-TERMINAL (INTERPROIPR015412) HAS 603 BLAST HITS TO 514 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 19 METAZOA - 326 FUNGI - 168 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK)
AT3G59540	Predicted Phenotypic Enhancement	FSW = 0.0929	Unknown	60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G01430	Predicted Phenotypic Enhancement	FSW = 0.0903	Unknown	GOT1-LIKE FAMILY PROTEIN
AT5G11500	Predicted Affinity Capture-MS	FSW = 0.0090	Unknown	UNKNOWN PROTEIN
AT5G24670	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0502	Unknown	CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G41700	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0354	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G57480	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.0153	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT5G61010	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1658	Unknown	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING
AT5G67220	Predicted synthetic growth defect	FSW = 0.0439	Unknown	NITROGEN REGULATION FAMILY PROTEIN
AT5G38110	Predicted Synthetic Rescue	FSW = 0.0359	Unknown	ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G49970	Predicted Phenotypic Enhancement	FSW = 0.1079	Unknown	ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G53770	Predicted Synthetic Rescue	FSW = 0.0167	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G61150	Predicted Synthetic Lethality	FSW = 0.0035	Unknown	VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G02530	Predicted Affinity Capture-MS Co-expression	FSW = 0.0135	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE

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Fasta sequences:

Proteins

DNA

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G24840 - ( tRNA (guanine-N7-)-methyltransferase )

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