Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26130 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN endomembrane system extracellular region EXPRESSED IN root leaf EXPRESSED DURING LP04 four leaves visible CONTAINS InterPro DOMAIN/s Allergen V5/Tpx-1 related conserved site (InterProIPR018244) Allergen V5/Tpx-1 related (InterProIPR001283) SCP-like extracellular (InterProIPR014044) BEST Arabidopsis thaliana protein match is pathogenesis-related protein putative (TAIRAT4G337101) Has 2282 Blast hits to 2195 proteins in 288 species Archae - 0 Bacteria - 49 Metazoa - 1341 Fungi - 231 Plants - 611 Viruses - 0 Other Eukaryotes - 50 (source NCBI BLink) )

15 Proteins interacs with AT5G26130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G14580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0627

Class C:

extracellular

 ATPRB1
AT2G14610

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1161

Class C:

extracellular

 PR1 (PATHOGENESIS-RELATED GENE 1)
AT3G19690

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2616

Class C:

extracellular

 PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G33720

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0916

Class C:

extracellular

 PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.0131

Unknown

 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G64190

Predicted

Synthetic Lethality

FSW = 0.0291

Unknown

 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G75170

Predicted

Co-purification

FSW = 0.1013

Unknown

 SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G21680

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0340

Unknown

 PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G40290

Predicted

Affinity Capture-Western

FSW = 0.0235

Unknown

 EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT1G26270

Predicted

two hybrid

two hybrid

Affinity Capture-MS

FSW = 0.2462

Unknown

 PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT4G36050

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0779

Unknown

 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G04710

Predicted

interologs mapping

FSW = 0.0421

Unknown

 ANKYRIN REPEAT FAMILY PROTEIN
AT3G47610

Predicted

Affinity Capture-MS

FSW = 0.0379

Unknown

 TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G24840

Predicted

Synthetic Lethality

FSW = 0.0269

Unknown

 TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G41610

Predicted

Affinity Capture-MS

FSW = 0.0494

Unknown

 ATCHX18 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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