Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36050 - ( endonuclease/exonuclease/phosphatase family protein )
77 Proteins interacs with AT4G36050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.0781
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | PredictedPhenotypic Suppression | FSW = 0.1947
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.1575
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.1649
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1225
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G58610 | PredictedPhenotypic Enhancement | FSW = 0.1281
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT2G31910 | PredictedAffinity Capture-Western | FSW = 0.0339
| Unknown | ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.1403
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.1473
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G45145 | PredictedPhenotypic Enhancement | FSW = 0.1420
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.1898
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.0412
| Unknown | SELENOPROTEIN-RELATED |
AT3G53890 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | 40S RIBOSOMAL PROTEIN S21 (RPS21B) |
AT1G75170 | PredictedCo-purification | FSW = 0.0595
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G02740 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G19930 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0089
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G65930 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT1G21700 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0894
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G19310 | PredictedPhenotypic Enhancementsynthetic growth defectsynthetic growth defectPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defectAffinity Capture-MSSynthetic Lethality | FSW = 0.0441
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT2G40290 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.0213
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT2G29570 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0103
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | PredictedCo-purificationtwo hybrid | FSW = 0.0091
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.0108
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G18480 | PredictedPhenotypic Suppression | FSW = 0.0844
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0981
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G26130 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0779
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK) |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.1862
| Unknown | ARA6 GTP BINDING / GTPASE |
AT5G41150 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defectSynthetic Lethality | FSW = 0.0618
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT4G16420 | PredictedPhenotypic Enhancement | FSW = 0.1247
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G14290 | Predictedtwo hybrid | FSW = 0.0480
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G05210 | PredictedPhenotypic Enhancement | FSW = 0.0120
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1239
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G07340 | PredictedPhenotypic Enhancement | FSW = 0.0153
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G13950 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0472
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT4G25150 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemical | FSW = 0.0143
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT1G10090 | Predictedsynthetic growth defect | FSW = 0.0640
| Unknown | UNKNOWN PROTEIN |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.1274
| Unknown | UNKNOWN PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1605
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G34580 | Predictedbiochemical | FSW = 0.0517
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.1989
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.1220
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G60680 | PredictedPhenotypic Suppression | FSW = 0.1458
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G68020 | PredictedPhenotypic Enhancement | FSW = 0.0889
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G68200 | Predictedbiochemicalbiochemical | FSW = 0.0159
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G78770 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1687
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G31020 | Predictedsynthetic growth defect | FSW = 0.0166
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G32050 | PredictedSynthetic Lethality | FSW = 0.0415
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.1475
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.1262
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G04710 | Predictedinterologs mapping | FSW = 0.0292
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G08700 | PredictedReconstituted Complexbiochemical | FSW = 0.0131
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT3G09640 | PredictedPhenotypic Suppression | FSW = 0.0647
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G11240 | PredictedPhenotypic Enhancement | FSW = 0.1109
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G18660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1097
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2193
| Unknown | UNKNOWN PROTEIN |
AT3G47290 | PredictedPhenotypic Suppression | FSW = 0.0928
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G47610 | Predictedsynthetic growth defect | FSW = 0.0665
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G48960 | PredictedPhenotypic Enhancement | FSW = 0.0211
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
AT3G54490 | PredictedPhenotypic Suppression | FSW = 0.0574
| Unknown | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1548
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G00980 | PredictedPhenotypic Suppression | FSW = 0.0709
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G21490 | PredictedPhenotypic Enhancement | FSW = 0.1686
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | PredictedPhenotypic Enhancement | FSW = 0.2723
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G14180 | PredictedPhenotypic Suppression | FSW = 0.0736
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G26250 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0640
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G38820 | PredictedPhenotypic Suppression | FSW = 0.0111
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G42720 | PredictedPhenotypic Enhancement | FSW = 0.1332
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G44830 | PredictedSynthetic Rescue | FSW = 0.1751
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.1961
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G64760 | PredictedPhenotypic Suppression | FSW = 0.1641
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G49560 | PredictedAffinity Capture-Western | FSW = 0.1007
| Unknown | UNKNOWN PROTEIN |
AT2G31450 | PredictedSynthetic Rescue | FSW = 0.0434
| Unknown | ENDONUCLEASE-RELATED |
AT3G50880 | PredictedPhenotypic Enhancement | FSW = 0.0434
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
AT3G46940 | Predictedinterologs mapping | FSW = 0.0502
| Unknown | DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY |
AT3G18630 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0635
| Unknown | URACIL DNA GLYCOSYLASE FAMILY PROTEIN |
AT1G19480 | PredictedSynthetic RescueCo-expression | FSW = 0.0339
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454