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AT3G54840 - ( ARA6 GTP binding / GTPase )

167 Proteins interacs with AT3G54840

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G71830	Experimental confocal microscopy	FSW = 0.0050	Class A: endoplasmic reticulum Class B: unclear plasma membrane endosome Class D: plastid (p = 0.78)	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT4G33000	Experimental confocal microscopy	FSW = 0.0128	Unknown	CBL10 (CALCINEURIN B-LIKE 10) CALCIUM ION BINDING
AT2G27600	Experimental confocal microscopy electron microscopy	FSW = 0.0120	Unknown	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G19640	Predicted Phylogenetic profile method Co-expression	FSW = 0.1609	Class C: endosome endoplasmic reticulum	ARA7 GTP BINDING
AT1G02130	Predicted Phylogenetic profile method	FSW = 0.1108	Class C: endoplasmic reticulum	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G07810	Predicted Phenotypic Suppression	FSW = 0.0667	Class C: endoplasmic reticulum	ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE
AT5G45130	Predicted Phylogenetic profile method Co-expression	FSW = 0.1300	Class C: endoplasmic reticulum	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT5G58640	Predicted Phenotypic Enhancement	FSW = 0.1040	Class C: endoplasmic reticulum	SELENOPROTEIN-RELATED
AT3G59500	Predicted interaction prediction	FSW = 0.0631	Class C: endoplasmic reticulum	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT3G09630	Predicted Phenotypic Enhancement	FSW = 0.0622	Unknown	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G09590	Predicted Phenotypic Suppression	FSW = 0.1986	Unknown	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G16660	Predicted Phenotypic Enhancement	FSW = 0.2776	Unknown	HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT1G20260	Predicted Phenotypic Enhancement	FSW = 0.1817	Unknown	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G17530	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1498	Unknown	ATRAB1C GTP BINDING
AT5G45750	Predicted Phylogenetic profile method	FSW = 0.1704	Unknown	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G49300	Predicted Phylogenetic profile method	FSW = 0.1205	Unknown	RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING
AT2G44610	Predicted interaction prediction Phylogenetic profile method Co-expression	FSW = 0.1324	Unknown	RAB6A GTP BINDING / PROTEIN BINDING
AT4G36750	Predicted two hybrid	FSW = 0.0458	Unknown	QUINONE REDUCTASE FAMILY PROTEIN
AT3G46060	Predicted Phylogenetic profile method	FSW = 0.1583	Unknown	ATRAB8A GTP BINDING
AT3G28710	Predicted Phenotypic Enhancement	FSW = 0.0406	Unknown	H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT1G16240	Predicted Phenotypic Enhancement	FSW = 0.0653	Unknown	SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT2G45170	Predicted Phenotypic Suppression	FSW = 0.1379	Unknown	ATATG8E MICROTUBULE BINDING
AT4G21980	Predicted Phenotypic Enhancement	FSW = 0.1182	Unknown	APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT3G60640	Predicted two hybrid Phenotypic Suppression	FSW = 0.0394	Unknown	ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING
AT3G57990	Predicted Synthetic Lethality	FSW = 0.0586	Unknown	UNKNOWN PROTEIN
AT3G22110	Predicted Phenotypic Enhancement	FSW = 0.1097	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G07090	Predicted Phenotypic Enhancement	FSW = 0.0868	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT3G62870	Predicted two hybrid	FSW = 0.0726	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G21880	Predicted Phylogenetic profile method	FSW = 0.1562	Unknown	ATRAB7A GTP BINDING
AT3G48170	Predicted Phenotypic Enhancement	FSW = 0.1526	Unknown	ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G09660	Predicted Phenotypic Enhancement	FSW = 0.2327	Unknown	PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G45770	Predicted two hybrid	FSW = 0.0327	Unknown	OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT1G74710	Predicted synthetic growth defect	FSW = 0.2029	Unknown	ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT5G14320	Predicted Affinity Capture-MS	FSW = 0.0251	Unknown	30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT1G56050	Predicted Phenotypic Suppression	FSW = 0.1617	Unknown	GTP-BINDING PROTEIN-RELATED
AT2G45300	Predicted Phenotypic Enhancement	FSW = 0.0724	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G51820	Predicted Phenotypic Enhancement	FSW = 0.1931	Unknown	PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT5G15450	Predicted Phenotypic Enhancement	FSW = 0.2108	Unknown	CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G48860	Predicted Phenotypic Enhancement	FSW = 0.1950	Unknown	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT2G43030	Predicted Phenotypic Enhancement	FSW = 0.0702	Unknown	RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT4G35860	Predicted Phylogenetic profile method	FSW = 0.1643	Unknown	ATGB2 (GTP-BINDING 2) GTP BINDING
AT2G42590	Predicted two hybrid	FSW = 0.0213	Unknown	GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G60540	Predicted Phenotypic Enhancement	FSW = 0.2453	Unknown	PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT3G16100	Predicted Phylogenetic profile method	FSW = 0.1070	Unknown	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT3G18820	Predicted Phylogenetic profile method	FSW = 0.1197	Unknown	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING
AT1G50310	Predicted Phenotypic Enhancement	FSW = 0.0097	Unknown	STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G04750	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.2477	Unknown	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT3G53610	Predicted Phylogenetic profile method	FSW = 0.1884	Unknown	ATRAB8 GTP BINDING
AT3G09900	Predicted Phylogenetic profile method	FSW = 0.1308	Unknown	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT5G47200	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1477	Unknown	ATRAB1A GTP BINDING
AT2G43130	Predicted Phylogenetic profile method	FSW = 0.2273	Unknown	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G33090	Predicted Phenotypic Suppression	FSW = 0.1620	Unknown	APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT5G59840	Predicted Phylogenetic profile method	FSW = 0.1505	Unknown	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT3G02740	Predicted Phenotypic Suppression Synthetic Rescue	FSW = 0.1009	Unknown	ASPARTYL PROTEASE FAMILY PROTEIN
AT3G11730	Predicted Phylogenetic profile method	FSW = 0.1176	Unknown	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G43890	Predicted Phylogenetic profile method	FSW = 0.1521	Unknown	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT2G37790	Predicted Phenotypic Enhancement	FSW = 0.1459	Unknown	ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G18800	Predicted Phenotypic Enhancement	FSW = 0.2762	Unknown	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT1G73640	Predicted Phylogenetic profile method	FSW = 0.1418	Unknown	ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT4G28860	Predicted Phenotypic Enhancement	FSW = 0.0850	Unknown	CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G27670	Predicted two hybrid	FSW = 0.0582	Unknown	HTA7 (HISTONE H2A 7) DNA BINDING
AT3G52250	Predicted Phenotypic Suppression	FSW = 0.2117	Unknown	DNA BINDING / TRANSCRIPTION FACTOR
AT3G13445	Predicted Phenotypic Suppression	FSW = 0.1272	Unknown	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT4G09800	Predicted Phenotypic Enhancement	FSW = 0.2082	Unknown	RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G55750	Predicted interaction prediction	FSW = 0.0063	Unknown	TRANSCRIPTION FACTOR-RELATED
AT3G57300	Predicted Phenotypic Suppression	FSW = 0.0368	Unknown	INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G43840	Predicted two hybrid	FSW = 0.0394	Unknown	AT-HSFA6A DNA BINDING / TRANSCRIPTION FACTOR
AT4G25340	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement synthetic growth defect	FSW = 0.1940	Unknown	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT1G60850	Predicted Phenotypic Suppression	FSW = 0.0132	Unknown	ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G40650	Predicted Phenotypic Suppression	FSW = 0.0207	Unknown	SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT1G10060	Predicted two hybrid	FSW = 0.0153	Unknown	BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT2G22290	Predicted Phylogenetic profile method	FSW = 0.1103	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT5G64990	Predicted Phylogenetic profile method	FSW = 0.1457	Unknown	ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT2G30160	Predicted Phenotypic Enhancement	FSW = 0.2801	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G03520	Predicted Phylogenetic profile method	FSW = 0.2277	Unknown	ATRAB8C GTP BINDING
AT1G30000	Predicted interologs mapping Reconstituted Complex Affinity Capture-Western	FSW = 0.0414	Unknown	GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN
AT4G33730	Predicted Phenotypic Enhancement	FSW = 0.0276	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G33710	Predicted Phenotypic Enhancement	FSW = 0.0981	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G06540	Predicted interaction prediction Enriched domain pair Co-expression	FSW = 0.0864	Unknown	GDP DISSOCIATION INHIBITOR FAMILY PROTEIN / RAB GTPASE ACTIVATOR FAMILY PROTEIN
AT4G39200	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.2500	Unknown	40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT2G05840	Predicted Phenotypic Suppression	FSW = 0.0227	Unknown	PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G05180	Predicted Phenotypic Enhancement	FSW = 0.0826	Unknown	AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT4G17190	Predicted Phenotypic Enhancement	FSW = 0.2276	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G02100	Predicted Phenotypic Suppression	FSW = 0.0910	Unknown	LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G10980	Predicted synthetic growth defect	FSW = 0.0830	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT1G20693	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2342	Unknown	HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G25155	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.2412	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G26690	Predicted Phenotypic Enhancement	FSW = 0.1511	Unknown	EMP24/GP25L/P24 FAMILY PROTEIN
AT1G27040	Predicted Phenotypic Enhancement	FSW = 0.1289	Unknown	NITRATE TRANSPORTER PUTATIVE
AT1G27320	Predicted Phenotypic Suppression	FSW = 0.0833	Unknown	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G31170	Predicted Phenotypic Enhancement	FSW = 0.1521	Unknown	SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G34580	Predicted Reconstituted Complex two hybrid Reconstituted Complex Synthetic Lethality interologs mapping Phenotypic Enhancement	FSW = 0.0998	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G35350	Predicted Phenotypic Enhancement	FSW = 0.1829	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G47830	Predicted Phenotypic Enhancement	FSW = 0.1620	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G66590	Predicted synthetic growth defect	FSW = 0.1360	Unknown	COX19 FAMILY PROTEIN
AT1G66740	Predicted Phenotypic Enhancement	FSW = 0.0145	Unknown	SGA2
AT1G68020	Predicted Phenotypic Enhancement	FSW = 0.2020	Unknown	ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT1G72680	Predicted Affinity Capture-MS	FSW = 0.0169	Unknown	CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT1G78770	Predicted synthetic growth defect	FSW = 0.1705	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT2G31260	Predicted Phenotypic Enhancement	FSW = 0.1081	Unknown	APG9 (AUTOPHAGY 9)
AT2G31900	Predicted Phenotypic Suppression Phenotypic Enhancement	FSW = 0.0386	Unknown	XIF MOTOR
AT2G34750	Predicted Phenotypic Enhancement	FSW = 0.1553	Unknown	RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G36060	Predicted Phenotypic Suppression	FSW = 0.0134	Unknown	UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN
AT2G37420	Predicted Phenotypic Enhancement	FSW = 0.3223	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G37925	Predicted synthetic growth defect	FSW = 0.0872	Unknown	COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT2G48100	Predicted Phenotypic Enhancement	FSW = 0.1935	Unknown	EXONUCLEASE FAMILY PROTEIN
AT3G02000	Predicted Phenotypic Enhancement	FSW = 0.1947	Unknown	ROXY1 DISULFIDE OXIDOREDUCTASE
AT3G06483	Predicted Phenotypic Enhancement	FSW = 0.1036	Unknown	PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G11240	Predicted Phenotypic Suppression	FSW = 0.1846	Unknown	ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT3G12200	Predicted Phenotypic Enhancement	FSW = 0.1245	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G13210	Predicted Phenotypic Enhancement	FSW = 0.0930	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G16840	Predicted Reconstituted Complex two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Reconstituted Complex Co-purification Affinity Capture-Western	FSW = 0.0378	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18660	Predicted Phenotypic Enhancement	FSW = 0.1785	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G27440	Predicted Affinity Capture-MS Phenotypic Suppression Co-purification Affinity Capture-Western	FSW = 0.2111	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G09270	Predicted Phenotypic Enhancement	FSW = 0.0735	Unknown	IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G10280	Predicted Phenotypic Suppression	FSW = 0.0320	Unknown	UNKNOWN PROTEIN
AT1G13950	Predicted synthetic growth defect	FSW = 0.0410	Unknown	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G15440	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0547	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G21370	Predicted Phenotypic Enhancement	FSW = 0.1876	Unknown	UNKNOWN PROTEIN
AT1G26320	Predicted Phenotypic Enhancement	FSW = 0.1486	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G29970	Predicted Phenotypic Enhancement	FSW = 0.1064	Unknown	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G55300	Predicted Phenotypic Enhancement	FSW = 0.2197	Unknown	TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G66240	Predicted Affinity Capture-MS	FSW = 0.0128	Unknown	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT1G68530	Predicted Phenotypic Enhancement	FSW = 0.0917	Unknown	KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS
AT1G71530	Predicted two hybrid	FSW = 0.0215	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G78970	Predicted Phenotypic Enhancement	FSW = 0.0478	Unknown	LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT2G03130	Predicted Phenotypic Enhancement	FSW = 0.2541	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G24960	Predicted Phenotypic Suppression	FSW = 0.1924	Unknown	UNKNOWN PROTEIN
AT2G42005	Predicted Phenotypic Suppression	FSW = 0.0177	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT3G01100	Predicted Phenotypic Enhancement	FSW = 0.1353	Unknown	HYP1 (HYPOTHETICAL PROTEIN 1)
AT3G11290	Predicted Phenotypic Enhancement	FSW = 0.0795	Unknown	UNKNOWN PROTEIN
AT3G18520	Predicted Phenotypic Suppression	FSW = 0.0300	Unknown	HDA15 HISTONE DEACETYLASE
AT3G22290	Predicted Phenotypic Enhancement	FSW = 0.2049	Unknown	UNKNOWN PROTEIN
AT4G00980	Predicted Phenotypic Suppression	FSW = 0.0346	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G16360	Predicted Phenotypic Enhancement	FSW = 0.0111	Unknown	AMP-ACTIVATED PROTEIN KINASE
AT4G21490	Predicted Phenotypic Enhancement	FSW = 0.1712	Unknown	NDB3 NADH DEHYDROGENASE
AT4G27130	Predicted Phenotypic Enhancement	FSW = 0.2763	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT4G29580	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.1621	Unknown	CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G04800	Predicted Phenotypic Enhancement	FSW = 0.1725	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G10830	Predicted Phenotypic Enhancement	FSW = 0.0285	Unknown	EMBRYO-ABUNDANT PROTEIN-RELATED
AT5G14060	Predicted Phenotypic Enhancement	FSW = 0.3131	Unknown	CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G16980	Predicted Phenotypic Enhancement	FSW = 0.2417	Unknown	NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G17860	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1322	Unknown	CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G45620	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2487	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G00800	Predicted Phenotypic Enhancement	FSW = 0.2289	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G26510	Predicted Phenotypic Enhancement	FSW = 0.0386	Unknown	ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT4G36050	Predicted Phenotypic Suppression	FSW = 0.1862	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G01770	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2291	Unknown	RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G20560	Predicted Affinity Capture-MS	FSW = 0.0345	Unknown	BETA-13-GLUCANASE PUTATIVE
AT5G41700	Predicted Phenotypic Enhancement	FSW = 0.0917	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G44830	Predicted Phenotypic Enhancement	FSW = 0.3653	Unknown	GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G49970	Predicted Phenotypic Enhancement	FSW = 0.2718	Unknown	ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G52210	Predicted two hybrid	FSW = 0.0212	Unknown	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G53940	Predicted Co-purification Affinity Capture-Western	FSW = 0.0455	Unknown	YIPPEE FAMILY PROTEIN
AT5G64760	Predicted Phenotypic Suppression	FSW = 0.2609	Unknown	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
ATCG00905	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0725	Unknown	CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT
AT5G35700	Predicted interaction prediction	FSW = 0.0045	Unknown	FIM2 (FIMBRIN-LIKE PROTEIN 2) ACTIN BINDING
AT3G22590	Predicted interaction prediction	FSW = 0.0140	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT1G08190	Predicted interaction prediction	FSW = 0.0339	Unknown	VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT5G09550	Predicted interaction prediction Enriched domain pair Co-expression	FSW = 0.0659	Unknown	RAB GDP-DISSOCIATION INHIBITOR
AT1G78580	Predicted interaction prediction	FSW = 0.0170	Unknown	ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G10260	Predicted Phylogenetic profile method	FSW = 0.0561	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT3G09910	Predicted Phylogenetic profile method	FSW = 0.1514	Unknown	ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT4G17160	Predicted Phylogenetic profile method	FSW = 0.1963	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING
AT5G03530	Predicted Phylogenetic profile method	FSW = 0.1393	Unknown	RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT2G31680	Predicted Phylogenetic profile method	FSW = 0.2105	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT4G39890	Predicted Phylogenetic profile method	FSW = 0.2038	Unknown	ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G54840 - ( ARA6 GTP binding / GTPase )

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