Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18820 - ( ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP binding )
21 Proteins interacs with AT3G18820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16100 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6000
| Class C:plasma membranenucleus | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT4G19640 | PredictedPhylogenetic profile method | FSW = 0.2964
| Class C:plasma membrane | ARA7 GTP BINDING |
AT1G52280 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4314
| Class C:plasma membrane | ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING |
AT1G49300 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.9000
| Class C:plasma membrane | RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING |
AT2G44610 | PredictedPhylogenetic profile method | FSW = 0.2323
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
AT2G43130 | PredictedPhylogenetic profile method | FSW = 0.3066
| Class C:plasma membrane | ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G45130 | PredictedPhylogenetic profile method | FSW = 0.2823
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT1G22740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3714
| Unknown | RABG3B GTP BINDING |
AT4G09720 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2933
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT2G21880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6910
| Unknown | ATRAB7A GTP BINDING |
AT2G22290 | PredictedPhylogenetic profile method | FSW = 0.1662
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT5G64990 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5389
| Unknown | ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING |
AT5G03520 | PredictedGene fusion methodCo-expression | FSW = 0.4705
| Unknown | ATRAB8C GTP BINDING |
AT3G54840 | PredictedPhylogenetic profile method | FSW = 0.1197
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G06540 | Predictedin vitroin vitroEnriched domain pairCo-expression | FSW = 0.2338
| Unknown | GDP DISSOCIATION INHIBITOR FAMILY PROTEIN / RAB GTPASE ACTIVATOR FAMILY PROTEIN |
AT4G36630 | Predictedtwo hybridtwo hybrid | FSW = 0.0313
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT5G07110 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1852
| Unknown | PRA1B6 (PRENYLATED RAB ACCEPTOR 1B6) |
AT1G08770 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.2462
| Unknown | PRA1E (PRENYLATED RAB ACCEPTOR 1E) |
AT5G39620 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4032
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
AT2G31680 | PredictedPhylogenetic profile method | FSW = 0.3166
| Unknown | ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING |
AT3G09890 | PredictedGene fusion method | FSW = 0.3048
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454