Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G52280 - ( AtRABG3d (Arabidopsis Rab GTPase homolog G3d) GTP binding )
22 Proteins interacs with AT1G52280| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G17530
   | PredictedPhylogenetic profile method | FSW = 0.3883
| Class C:vacuoleplasma membrane | ATRAB1C GTP BINDING |
| AT1G02130
| PredictedPhylogenetic profile method | FSW = 0.1926
| Class C:vacuoleplasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT1G49300
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4909
| Class C:vacuoleplasma membrane | RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING |
| AT3G46060
| PredictedPhylogenetic profile method | FSW = 0.3820
| Class C:vacuoleplasma membrane | ATRAB8A GTP BINDING |
| AT4G09720
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6682
| Class C:vacuole | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
| AT1G22740
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5928
| Class C:vacuole | RABG3B GTP BINDING |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0019
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT2G21880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3673
| Class C:vacuole | ATRAB7A GTP BINDING |
| AT3G16100
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3029
| Class C:plasma membrane | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
| AT3G18820
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4314
| Class C:plasma membrane | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING |
| AT3G53610
| PredictedPhylogenetic profile method | FSW = 0.4103
| Class C:plasma membrane | ATRAB8 GTP BINDING |
| AT3G09900
| PredictedPhylogenetic profile method | FSW = 0.2661
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT5G59840
| PredictedPhylogenetic profile method | FSW = 0.4229
| Class C:plasma membrane | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
| AT5G47200
| PredictedPhylogenetic profile method | FSW = 0.3535
| Class C:plasma membrane | ATRAB1A GTP BINDING |
| AT1G43890
| PredictedPhylogenetic profile method | FSW = 0.4304
| Class C:plasma membrane | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING |
| AT5G64990
| PredictedGene fusion methodCo-expression | FSW = 0.2755
| Unknown | ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING |
| AT5G03520
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5638
| Unknown | ATRAB8C GTP BINDING |
| AT3G57140
| Predictedbiochemical | FSW = 0.0308
| Unknown | PATATIN-RELATED |
| AT5G39620
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8595
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
| AT5G03530
| PredictedPhylogenetic profile method | FSW = 0.3883
| Unknown | RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT3G09910
| PredictedPhylogenetic profile method | FSW = 0.5039
| Unknown | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING |
| AT3G09890
| PredictedGene fusion method | FSW = 0.2949
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.307 seconds to be build.
This page takes 0.307 seconds to be build.