Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59840 - ( Ras-related GTP-binding family protein )
40 Proteins interacs with AT5G59840| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G14960
   | PredictedAffinity Capture-Western | FSW = 0.0144
| Class C:plasma membrane | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT4G17530
| PredictedPhylogenetic profile method | FSW = 0.5335
| Class C:plasma membrane | ATRAB1C GTP BINDING |
| AT5G45750
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5087
| Class C:plasma membrane | ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING |
| AT4G19640
| PredictedPhylogenetic profile method | FSW = 0.1993
| Class C:plasma membrane | ARA7 GTP BINDING |
| AT1G02130
| PredictedPhylogenetic profile method | FSW = 0.3176
| Class C:plasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT1G52280
| PredictedPhylogenetic profile method | FSW = 0.4229
| Class C:plasma membrane | ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING |
| AT3G46060
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6585
| Class C:plasma membrane | ATRAB8A GTP BINDING |
| AT4G17170
| PredictedPhylogenetic profile method | FSW = 0.3378
| Class C:plasma membrane | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE |
| AT2G44610
| PredictedPhylogenetic profile method | FSW = 0.1862
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT1G16920
| PredictedGene fusion methodCo-expression | FSW = 0.3453
| Class C:plasma membrane | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
| AT1G64740
| Predictedin vivo | FSW = 0.0409
| Class C:plasma membrane | TUA1 (ALPHA-1 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G53610
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6241
| Class C:plasma membrane | ATRAB8 GTP BINDING |
| AT5G59150
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4878
| Class C:plasma membrane | ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING |
| AT1G06400
| PredictedGene fusion methodCo-expression | FSW = 0.3363
| Class C:plasma membrane | ARA-2 GTP BINDING |
| AT3G09900
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4246
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT5G47200
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4919
| Class C:plasma membrane | ATRAB1A GTP BINDING |
| AT2G43130
| PredictedPhylogenetic profile method | FSW = 0.5310
| Class C:plasma membrane | ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT5G19330
| PredictedAffinity Capture-Western | FSW = 0.0065
| Class C:plasma membrane | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
| AT1G43890
| PredictedPhylogenetic profile method | FSW = 0.5137
| Class C:plasma membrane | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING |
| AT3G11730
| PredictedPhylogenetic profile method | FSW = 0.3073
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT5G45130
| PredictedPhylogenetic profile method | FSW = 0.1087
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
| AT1G22740
| PredictedPhylogenetic profile method | FSW = 0.4149
| Unknown | RABG3B GTP BINDING |
| AT4G09720
| PredictedPhylogenetic profile method | FSW = 0.3266
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
| AT4G32830
| PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G01200
| PredictedPhylogenetic profile method | FSW = 0.5213
| Unknown | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING |
| AT5G05620
| PredictedAffinity Capture-Western | FSW = 0.0227
| Unknown | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
| AT2G22290
| PredictedPhylogenetic profile method | FSW = 0.1770
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
| AT1G69220
| Predictedin vivo | FSW = 0.0089
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G03520
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6934
| Unknown | ATRAB8C GTP BINDING |
| AT3G54840
| PredictedPhylogenetic profile method | FSW = 0.1505
| Unknown | ARA6 GTP BINDING / GTPASE |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0028
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT1G67500
| Predictedtwo hybridtwo hybrid | FSW = 0.0070
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
| AT4G34540
| PredictedAffinity Capture-Western | FSW = 0.0144
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
| AT4G35410
| PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
| AT5G09550
| Predictedin vitroAffinity Capture-MS | FSW = 0.1961
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT5G03530
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5335
| Unknown | RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT3G09910
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6645
| Unknown | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING |
| AT5G55080
| PredictedPhylogenetic profile method | FSW = 0.2721
| Unknown | ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT5G39620
| PredictedPhylogenetic profile method | FSW = 0.4855
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
| AT4G17160
| PredictedPhylogenetic profile method | FSW = 0.4862
| Unknown | ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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