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AT1G06400 - ( ARA-2 GTP binding )

57 Proteins interacs with AT1G06400

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G17530	Predicted Phylogenetic profile method	FSW = 0.6505	Class C: plasma membrane	ATRAB1C GTP BINDING
AT5G45750	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.7296	Class C: plasma membrane	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G02130	Predicted Affinity Capture-Western interologs mapping Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5573	Class C: plasma membrane	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT3G46060	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6862	Class C: plasma membrane	ATRAB8A GTP BINDING
AT4G17170	Predicted Phylogenetic profile method	FSW = 0.6382	Class C: plasma membrane	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT2G44610	Predicted Phylogenetic profile method	FSW = 0.2701	Class C: plasma membrane	RAB6A GTP BINDING / PROTEIN BINDING
AT5G47520	Predicted Phylogenetic profile method Co-expression	FSW = 0.7296	Class C: plasma membrane	ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT1G16920	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7738	Class C: plasma membrane	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT1G11680	Predicted Synthetic Lethality	FSW = 0.0124	Class C: plasma membrane	CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT1G13210	Predicted Synthetic Lethality	FSW = 0.0305	Class C: plasma membrane	ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT1G28550	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7521	Class C: plasma membrane	ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G59840	Predicted Gene fusion method Co-expression	FSW = 0.3363	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT1G07410	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7814	Class C: plasma membrane	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G59150	Predicted Phylogenetic profile method Co-expression	FSW = 0.7390	Class C: plasma membrane	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT3G46830	Predicted Phylogenetic profile method Co-expression	FSW = 0.7318	Class C: plasma membrane	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT4G18430	Predicted Phylogenetic profile method Co-expression	FSW = 0.7427	Class C: plasma membrane	ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT4G39990	Predicted Phylogenetic profile method Co-expression	FSW = 0.6981	Class C: plasma membrane	RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT3G53610	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6348	Class C: plasma membrane	ATRAB8 GTP BINDING
AT1G09630	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6669	Class C: plasma membrane	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT5G47200	Predicted Phylogenetic profile method	FSW = 0.6056	Class C: plasma membrane	ATRAB1A GTP BINDING
AT2G43130	Predicted Phylogenetic profile method Co-expression	FSW = 0.7047	Class C: plasma membrane	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G07410	Predicted Phylogenetic profile method Co-expression	FSW = 0.7218	Class C: plasma membrane	ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT4G18800	Predicted Phylogenetic profile method Co-expression	FSW = 0.3669	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT1G73640	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7256	Class C: plasma membrane	ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT5G65270	Predicted Phylogenetic profile method Co-expression	FSW = 0.7253	Class C: plasma membrane	ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING
AT1G43890	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6586	Class C: plasma membrane	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT3G11730	Predicted Phylogenetic profile method	FSW = 0.4663	Class C: plasma membrane	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G20970	Predicted interologs mapping	FSW = 0.0754	Class C: plasma membrane	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT2G06530	Predicted two hybrid	FSW = 0.0227	Unknown	VPS21
AT4G35860	Predicted Phylogenetic profile method	FSW = 0.7256	Unknown	ATGB2 (GTP-BINDING 2) GTP BINDING
AT2G15240	Predicted two hybrid	FSW = 0.0722	Unknown	UNC-50 FAMILY PROTEIN
AT1G01200	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7337	Unknown	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT5G64990	Predicted Phylogenetic profile method	FSW = 0.4321	Unknown	ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT5G03520	Predicted Gene fusion method Co-expression	FSW = 0.5156	Unknown	ATRAB8C GTP BINDING
AT1G04260	Predicted Affinity Capture-Western two hybrid	FSW = 0.1040	Unknown	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT2G44100	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Enriched domain pair Co-expression	FSW = 0.1077	Unknown	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR
AT2G36300	Predicted two hybrid Synthetic Lethality Affinity Capture-Western Synthetic Lethality two hybrid	FSW = 0.1150	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT5G54750	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0628	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT1G01960	Predicted interologs mapping	FSW = 0.0143	Unknown	EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT2G37550	Predicted interologs mapping	FSW = 0.0606	Unknown	AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT3G05000	Predicted interologs mapping	FSW = 0.1151	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT2G18840	Predicted Reconstituted Complex	FSW = 0.1125	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT1G30890	Predicted two hybrid Reconstituted Complex two hybrid	FSW = 0.1194	Unknown	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT5G09350	Predicted Synthetic Lethality Enriched domain pair	FSW = 0.1492	Unknown	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT3G07890	Predicted Synthetic Rescue	FSW = 0.1194	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT1G32270	Predicted two hybrid	FSW = 0.0219	Unknown	ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT2G29400	Predicted two hybrid	FSW = 0.0038	Unknown	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G33870	Predicted Phylogenetic profile method Co-expression	FSW = 0.7917	Unknown	ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT3G12160	Predicted Phylogenetic profile method Co-expression	FSW = 0.7391	Unknown	RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING
AT2G31680	Predicted Phylogenetic profile method Co-expression	FSW = 0.6996	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT3G15060	Predicted Phylogenetic profile method Co-expression	FSW = 0.7917	Unknown	ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT5G47960	Predicted Phylogenetic profile method Co-expression	FSW = 0.7917	Unknown	ATRABA4C GTP BINDING
AT5G60860	Predicted Phylogenetic profile method Co-expression	FSW = 0.7917	Unknown	ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT5G10260	Predicted Phylogenetic profile method	FSW = 0.1061	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G55080	Predicted Phylogenetic profile method	FSW = 0.5193	Unknown	ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G03530	Predicted Phylogenetic profile method	FSW = 0.6725	Unknown	RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT4G17160	Predicted Phylogenetic profile method	FSW = 0.7467	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G06400 - ( ARA-2 GTP binding )

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FSW

C3

PEP

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