Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44100 - ( ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-dissociation inhibitor )
27 Proteins interacs with AT2G44100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT4G19640 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridEnriched domain pairCo-expression | FSW = 0.0781
| Unknown | ARA7 GTP BINDING |
AT1G02130 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridShared biological functionEnriched domain pairCo-expression | FSW = 0.1363
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT3G46060 | Predictedco-fractionationCo-fractionation | FSW = 0.1564
| Unknown | ATRAB8A GTP BINDING |
AT1G22740 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridEnriched domain pairCo-expression | FSW = 0.1513
| Unknown | RABG3B GTP BINDING |
AT3G13080 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT5G47510 | PredictedPhenotypic SuppressionSynthetic Lethalityinterologs mapping | FSW = 0.0148
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT3G09900 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-WesternSynthetic Lethalitytwo hybridEnriched domain pairCo-expression | FSW = 0.1674
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT1G71820 | PredictedSynthetic Lethality | FSW = 0.0963
| Unknown | SEC6 |
AT1G20970 | PredictedSynthetic Lethality | FSW = 0.1734
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
AT4G18430 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0933
| Unknown | ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING |
AT1G06400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridEnriched domain pairCo-expression | FSW = 0.1077
| Unknown | ARA-2 GTP BINDING |
AT1G06960 | Predictedtwo hybrid | FSW = 0.0051
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G18760 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G22290 | PredictedAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MStwo hybridEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0695
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G05180 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0184
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT3G11240 | PredictedPhenotypic Suppression | FSW = 0.0345
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT3G57140 | Predictedbiochemical | FSW = 0.0121
| Unknown | PATATIN-RELATED |
AT5G10830 | PredictedPhenotypic Enhancement | FSW = 0.0447
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT3G25230 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.1008
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.1176
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT2G36300 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1484
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G59920 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1067
| Unknown | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) RAB GDP-DISSOCIATION INHIBITOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454