Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18430 - ( AtRABA1e (Arabidopsis Rab GTPase homolog A1e) GTP binding )
52 Proteins interacs with AT4G18430| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G17530
   | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6644
| Class C:plasma membrane | ATRAB1C GTP BINDING |
| AT5G45750
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7468
| Class C:plasma membrane | ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING |
| AT1G02130
| Predictedinterologs mappingPhylogenetic profile method | FSW = 0.5252
| Class C:plasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT3G46060
| PredictedPhylogenetic profile method | FSW = 0.7018
| Class C:plasma membrane | ATRAB8A GTP BINDING |
| AT4G17170
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6512
| Class C:plasma membrane | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE |
| AT2G44610
| PredictedPhylogenetic profile method | FSW = 0.3025
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT5G47520
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7468
| Class C:plasma membrane | ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING |
| AT1G16920
| Predictedinterologs mappingsynthetic growth defectSynthetic LethalityPhenotypic EnhancementPhylogenetic profile methodCo-expression | FSW = 0.7935
| Class C:plasma membrane | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
| AT1G28550
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7934
| Class C:plasma membrane | ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING |
| AT5G59150
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.7327
| Class C:plasma membrane | ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING |
| AT3G46830
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.7486
| Class C:plasma membrane | ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING |
| AT4G39990
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7382
| Class C:plasma membrane | RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING |
| AT1G07410
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8243
| Class C:plasma membrane | ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT1G06400
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7427
| Class C:plasma membrane | ARA-2 GTP BINDING |
| AT3G53610
| PredictedPhylogenetic profile method | FSW = 0.6482
| Class C:plasma membrane | ATRAB8 GTP BINDING |
| AT1G09630
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.7741
| Class C:plasma membrane | ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING |
| AT5G47200
| PredictedPhylogenetic profile method | FSW = 0.6180
| Class C:plasma membrane | ATRAB1A GTP BINDING |
| AT2G43130
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7213
| Class C:plasma membrane | ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G07410
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.7628
| Class C:plasma membrane | ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING |
| AT5G65270
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7674
| Class C:plasma membrane | ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING |
| AT1G73640
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7424
| Class C:plasma membrane | ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING |
| AT4G18800
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3870
| Class C:plasma membrane | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT3G11730
| PredictedPhylogenetic profile method | FSW = 0.4745
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT1G43890
| PredictedPhylogenetic profile method | FSW = 0.6494
| Class C:plasma membrane | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING |
| AT1G55190
| Predictedtwo hybridAffinity Capture-Western | FSW = 0.1452
| Unknown | PRA7 |
| AT4G35860
| PredictedPhylogenetic profile method | FSW = 0.7424
| Unknown | ATGB2 (GTP-BINDING 2) GTP BINDING |
| AT1G01200
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7512
| Unknown | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING |
| AT2G22290
| PredictedSynthetic Lethality | FSW = 0.1989
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
| AT5G64990
| PredictedPhylogenetic profile method | FSW = 0.4610
| Unknown | ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING |
| AT3G24350
| PredictedCo-purification | FSW = 0.0901
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
| AT3G59500
| PredictedReconstituted Complextwo hybrid | FSW = 0.1802
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
| AT3G05710
| PredictedCo-purification | FSW = 0.0601
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
| AT1G08730 | Predictedin vitrotwo hybrid | FSW = 0.0918
| Unknown | XIC MOTOR/ PROTEIN BINDING |
| AT3G07890
| PredictedSynthetic Rescue | FSW = 0.1719
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT2G36300
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1429
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
| AT2G37550
| Predictedinterologs mapping | FSW = 0.0656
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
| AT3G12740
| Predictedinterologs mapping | FSW = 0.0821
| Unknown | ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER |
| AT3G60860
| Predictedinterologs mapping | FSW = 0.0142
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
| AT5G09550
| PredictedAffinity Capture-MStwo hybrid | FSW = 0.1340
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT2G44100
| PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0933
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
| AT2G31900
| Predictedin vitrotwo hybrid | FSW = 0.0104
| Unknown | XIF MOTOR |
| AT1G78270
| Predictedtwo hybrid | FSW = 0.0416
| Unknown | ATUGT85A4 (UDP-GLUCOSYL TRANSFERASE 85A4) UDP-GLYCOSYLTRANSFERASE/ GLUCURONOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
| AT5G47960
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8352
| Unknown | ATRABA4C GTP BINDING |
| AT2G33870
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8352
| Unknown | ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING |
| AT3G12160
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7816
| Unknown | RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING |
| AT2G31680
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7381
| Unknown | ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING |
| AT3G15060
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.8352
| Unknown | ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING |
| AT5G60860
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.8352
| Unknown | ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING |
| AT5G55080
| PredictedPhylogenetic profile method | FSW = 0.4972
| Unknown | ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT4G17160
| PredictedPhylogenetic profile method | FSW = 0.7420
| Unknown | ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING |
| AT5G03530
| PredictedPhylogenetic profile method | FSW = 0.6644
| Unknown | RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT5G10260
| PredictedPhylogenetic profile method | FSW = 0.1655
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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