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AT2G22290 - ( ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP binding )

116 Proteins interacs with AT2G22290

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G05710	Predicted Affinity Capture-MS	FSW = 0.0058	Class C: mitochondrion	ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE
AT1G50500	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.1260	Class C: mitochondrion	HIT1 (HEAT-INTOLERANT 1) TRANSPORTER
AT5G64990	Predicted Phylogenetic profile method Co-expression	FSW = 0.1846	Class C: mitochondrion	ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT3G27170	Predicted Synthetic Lethality	FSW = 0.0316	Unknown	CLC-B (CHLORIDE CHANNEL B) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL
AT1G20010	Predicted Synthetic Lethality	FSW = 0.0022	Unknown	TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G17530	Predicted Phylogenetic profile method	FSW = 0.2048	Unknown	ATRAB1C GTP BINDING
AT5G45750	Predicted Phylogenetic profile method	FSW = 0.2176	Unknown	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT4G19640	Predicted Synthetic Lethality Phylogenetic profile method Co-expression	FSW = 0.2617	Unknown	ARA7 GTP BINDING
AT1G02130	Predicted interologs mapping Phylogenetic profile method Co-expression	FSW = 0.2353	Unknown	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G49300	Predicted Phylogenetic profile method	FSW = 0.1870	Unknown	RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING
AT3G58730	Predicted Synthetic Lethality	FSW = 0.0445	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT2G44610	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4867	Unknown	RAB6A GTP BINDING / PROTEIN BINDING
AT4G02620	Predicted Synthetic Lethality	FSW = 0.0779	Unknown	VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT3G01390	Predicted Synthetic Lethality	FSW = 0.0356	Unknown	VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT3G46060	Predicted Phylogenetic profile method	FSW = 0.2445	Unknown	ATRAB8A GTP BINDING
AT1G19910	Predicted Synthetic Lethality	FSW = 0.0256	Unknown	AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G31780	Predicted Synthetic Lethality	FSW = 0.1314	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G45200	Predicted interologs mapping Synthetic Lethality	FSW = 0.1393	Unknown	GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G45130	Predicted Phylogenetic profile method Co-expression	FSW = 0.1761	Unknown	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G22740	Predicted Synthetic Lethality	FSW = 0.2751	Unknown	RABG3B GTP BINDING
AT4G04910	Predicted Synthetic Lethality	FSW = 0.0314	Unknown	NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G30710	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1548	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT1G64330	Predicted Synthetic Lethality	FSW = 0.0450	Unknown	MYOSIN HEAVY CHAIN-RELATED
AT2G21880	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.1794	Unknown	ATRAB7A GTP BINDING
AT5G58060	Predicted interologs mapping interologs mapping	FSW = 0.0859	Unknown	YKT61
AT5G16630	Predicted Synthetic Lethality	FSW = 0.0277	Unknown	RAD4 DAMAGED DNA BINDING
AT4G19490	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0853	Unknown	PROTEIN BINDING
AT3G16100	Predicted Phylogenetic profile method	FSW = 0.1778	Unknown	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT3G18820	Predicted Phylogenetic profile method	FSW = 0.1662	Unknown	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING
AT1G17880	Predicted Synthetic Lethality	FSW = 0.0050	Unknown	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE
AT5G52640	Predicted Affinity Capture-MS	FSW = 0.0310	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G53610	Predicted Phylogenetic profile method	FSW = 0.2129	Unknown	ATRAB8 GTP BINDING
AT3G09900	Predicted Phylogenetic profile method	FSW = 0.2714	Unknown	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G09630	Predicted Phylogenetic profile method	FSW = 0.1414	Unknown	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT1G08820	Predicted Synthetic Lethality	FSW = 0.0416	Unknown	VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT3G07410	Predicted Phylogenetic profile method	FSW = 0.1569	Unknown	ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT1G11960	Predicted Synthetic Lethality	FSW = 0.0112	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF221 (INTERPROIPR003864) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED (TAIRAT1G623201) HAS 746 BLAST HITS TO 706 PROTEINS IN 111 SPECIES ARCHAE - 0 BACTERIA - 4 METAZOA - 131 FUNGI - 370 PLANTS - 224 VIRUSES - 0 OTHER EUKARYOTES - 17 (SOURCE NCBI BLINK)
AT5G47200	Predicted Phylogenetic profile method	FSW = 0.1882	Unknown	ATRAB1A GTP BINDING
AT2G43130	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.2917	Unknown	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G59840	Predicted Phylogenetic profile method	FSW = 0.1770	Unknown	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G18430	Predicted Synthetic Lethality	FSW = 0.1989	Unknown	ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT4G39990	Predicted Phylogenetic profile method	FSW = 0.1569	Unknown	RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT3G11730	Predicted Phylogenetic profile method	FSW = 0.1291	Unknown	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G09640	Predicted Synthetic Lethality	FSW = 0.0072	Unknown	ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT2G15240	Predicted Synthetic Lethality	FSW = 0.0509	Unknown	UNC-50 FAMILY PROTEIN
AT2G05590	Predicted Synthetic Lethality	FSW = 0.0336	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TLDC (INTERPROIPR006571) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G398701) HAS 522 BLAST HITS TO 522 PROTEINS IN 113 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 307 FUNGI - 48 PLANTS - 62 VIRUSES - 0 OTHER EUKARYOTES - 105 (SOURCE NCBI BLINK)
AT1G01200	Predicted Phylogenetic profile method	FSW = 0.2256	Unknown	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT3G12810	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0341	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G79830	Predicted Affinity Capture-Western Affinity Capture-Western	FSW = 0.0650	Unknown	GC5 (GOLGIN CANDIDATE 5) PROTEIN BINDING
AT1G28490	Predicted Synthetic Lethality	FSW = 0.0756	Unknown	SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT5G03520	Predicted Phylogenetic profile method	FSW = 0.2923	Unknown	ATRAB8C GTP BINDING
AT1G04260	Predicted Affinity Capture-Western two hybrid	FSW = 0.1146	Unknown	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT3G24350	Predicted Synthetic Lethality	FSW = 0.0950	Unknown	SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT1G55130	Predicted Synthetic Lethality	FSW = 0.0434	Unknown	ENDOMEMBRANE PROTEIN 70 PUTATIVE
AT1G71270	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.1231	Unknown	POK (POKY POLLEN TUBE)
AT3G54840	Predicted Phylogenetic profile method	FSW = 0.1103	Unknown	ARA6 GTP BINDING / GTPASE
AT3G05710	Predicted Synthetic Lethality	FSW = 0.1709	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT3G47690	Predicted Synthetic Lethality	FSW = 0.0174	Unknown	ATEB1A MICROTUBULE BINDING
AT3G02580	Predicted Synthetic Lethality	FSW = 0.0547	Unknown	STE1 (STEROL 1) C-5 STEROL DESATURASE
AT1G69700	Predicted Affinity Capture-Western	FSW = 0.0509	Unknown	ATHVA22C
AT2G44100	Predicted Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-MS two hybrid Enriched domain pair Gene neighbors method Co-expression	FSW = 0.0695	Unknown	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR
AT3G11450	Predicted Affinity Capture-MS	FSW = 0.0132	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT3G06000	Predicted Affinity Capture-MS	FSW = 0.0075	Unknown	LEUCINE-RICH REPEAT FAMILY PROTEIN
AT3G07890	Predicted Affinity Capture-Western biochemical	FSW = 0.0624	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT5G52210	Predicted Synthetic Lethality Synthetic Lethality interologs mapping	FSW = 0.0763	Unknown	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT2G17980	Predicted interologs mapping Synthetic Lethality Synthetic Rescue	FSW = 0.1038	Unknown	ATSLY1 PROTEIN TRANSPORTER
AT5G13240	Predicted Phenotypic Suppression	FSW = 0.0431	Unknown	TRANSCRIPTION REGULATOR
AT2G18840	Predicted Reconstituted Complex	FSW = 0.0753	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT1G30890	Predicted Reconstituted Complex	FSW = 0.1644	Unknown	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT5G53770	Predicted synthetic growth defect	FSW = 0.0165	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT1G55255	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.0341	Unknown	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT1G14400	Predicted synthetic growth defect	FSW = 0.0443	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G22590	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0413	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G26550	Predicted Synthetic Lethality	FSW = 0.1016	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G560201) HAS 452 BLAST HITS TO 452 PROTEINS IN 136 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 198 FUNGI - 89 PLANTS - 61 VIRUSES - 0 OTHER EUKARYOTES - 104 (SOURCE NCBI BLINK)
AT2G18240	Predicted Synthetic Lethality	FSW = 0.0756	Unknown	RER1 PROTEIN PUTATIVE
AT4G35890	Predicted Synthetic Lethality	FSW = 0.0136	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT1G16560	Predicted Synthetic Lethality	FSW = 0.0912	Unknown	PER1-LIKE FAMILY PROTEIN
AT1G43900	Predicted Synthetic Lethality	FSW = 0.0212	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G01910	Predicted Synthetic Lethality	FSW = 0.0698	Unknown	ANION-TRANSPORTING ATPASE PUTATIVE
AT1G08190	Predicted Synthetic Lethality	FSW = 0.0735	Unknown	VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT2G11000	Predicted Synthetic Lethality	FSW = 0.0616	Unknown	ATMAK10 ACETYLTRANSFERASE
AT2G35210	Predicted Synthetic Lethality	FSW = 0.0661	Unknown	RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G12340	Predicted Synthetic Lethality	FSW = 0.1197	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)
AT1G57600	Predicted Synthetic Lethality	FSW = 0.0987	Unknown	MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN
AT1G09020	Predicted Synthetic Lethality	FSW = 0.0170	Unknown	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G16225	Predicted Synthetic Lethality	FSW = 0.0557	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK)
AT1G61040	Predicted Synthetic Lethality	FSW = 0.0223	Unknown	VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT3G47810	Predicted Synthetic Lethality	FSW = 0.0804	Unknown	MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G06140	Predicted Synthetic Lethality	FSW = 0.0479	Unknown	SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT4G27690	Predicted Synthetic Lethality	FSW = 0.0790	Unknown	VPS26B (VACUOLAR PROTEIN SORTING 26B)
AT1G75850	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0353	Unknown	VPS35B (VPS35 HOMOLOG B)
AT3G18430	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0372	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT5G16850	Predicted Synthetic Lethality	FSW = 0.0304	Unknown	ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE
AT2G46880	Predicted Synthetic Lethality	FSW = 0.0085	Unknown	PAP14 (PURPLE ACID PHOSPHATASE 14) ACID PHOSPHATASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G17530	Predicted Synthetic Lethality	FSW = 0.0075	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G09460	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1166	Unknown	GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT4G16700	Predicted Synthetic Lethality	FSW = 0.0220	Unknown	PSD1 (PHOSPHATIDYLSERINE DECARBOXYLASE 1) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G27970	Predicted Synthetic Lethality	FSW = 0.0679	Unknown	BINDING
AT1G52740	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0426	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G40730	Predicted Synthetic Lethality	FSW = 0.0187	Unknown	HEAT REPEAT-CONTAINING PROTEIN
AT3G61710	Predicted Synthetic Lethality	FSW = 0.0431	Unknown	AUTOPHAGY PROTEIN APG6 FAMILY
AT1G48760	Predicted Synthetic Lethality	FSW = 0.1305	Unknown	DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G38130	Predicted Synthetic Lethality	FSW = 0.0619	Unknown	ATMAK3 N-ACETYLTRANSFERASE
AT1G05520	Predicted Synthetic Lethality	FSW = 0.0554	Unknown	TRANSPORT PROTEIN PUTATIVE
AT5G45140	Predicted Synthetic Lethality	FSW = 0.0210	Unknown	NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G60970	Predicted Synthetic Lethality	FSW = 0.0293	Unknown	CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT4G34450	Predicted Synthetic Lethality	FSW = 0.0573	Unknown	COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT1G52360	Predicted Synthetic Lethality	FSW = 0.0948	Unknown	COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT2G18000	Predicted Synthetic Lethality	FSW = 0.0456	Unknown	TAF14 (TBP-ASSOCIATED FACTOR 14)
AT1G16360	Predicted Synthetic Lethality	FSW = 0.0107	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT2G36300	Predicted Synthetic Lethality Synthetic Lethality two hybrid	FSW = 0.1539	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT1G54370	Predicted Synthetic Rescue	FSW = 0.0220	Unknown	NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER
AT2G31680	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.2700	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT4G39890	Predicted Phylogenetic profile method Co-expression	FSW = 0.2433	Unknown	ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING
AT3G09910	Predicted Phylogenetic profile method	FSW = 0.2082	Unknown	ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT5G10260	Predicted Phylogenetic profile method	FSW = 0.3426	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G22290 - ( ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP binding )

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