Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17880 - ( nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor putative )
24 Proteins interacs with AT1G17880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G35620 | Experimental | FSW = 0.0395
| Class A:nucleusClass B:plasma membranecytosolClass D:mitochondrion (p = 0.82) | LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) RNA 7-METHYLGUANOSINE CAP BINDING / RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G18410 | Experimental | FSW = 0.0658
| Unknown | PIR121 TRANSCRIPTION ACTIVATOR |
AT1G73230 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0505
| Class C:plasma membranenucleus | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT3G12390 | Predictedtwo hybridtwo hybridEnriched domain pairCo-expression | FSW = 0.0847
| Class C:plasma membrane | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0306
| Class C:nucleus | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT4G34700 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
AT5G17550 | Predictedtwo hybrid | FSW = 0.0204
| Unknown | PEX19-2 |
AT3G03490 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | PEX19-1 (PEROXIN 19-1) |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0050
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT5G42970 | Predictedtwo hybridtwo hybrid | FSW = 0.0152
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT4G39100 | Predictedinterologs mapping | FSW = 0.0156
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT5G63860 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT5G13850 | Predictedtwo hybridtwo hybrid | FSW = 0.0664
| Unknown | NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) |
AT5G39440 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | SNRK13 (SNF1-RELATED PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G48470 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
AT1G03910 | Predictedtwo hybridtwo hybrid | FSW = 0.0415
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
AT2G14045 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | UNKNOWN PROTEIN |
AT5G47080 | Predictedin vitrotwo hybrid | FSW = 0.0123
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT1G66950 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16700 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN |
AT1G47490 | PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT1G33040 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationtwo hybridCo-expression | FSW = 0.0247
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G17130 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454