Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G73230 - ( nascent polypeptide-associated complex (NAC) domain-containing protein )
60 Proteins interacs with AT1G73230| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G36530
   | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2929
| Class C:plasma membranenucleus | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
| AT1G76040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3709
| Class C:plasma membranenucleus | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT1G17880
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0505
| Class C:plasma membranenucleus | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
| AT3G17390
| PredictedAffinity Capture-MS | FSW = 0.0457
| Class C:plasma membranenucleus | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
| AT2G44610
| Predictedinteraction prediction | FSW = 0.0095
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT2G34480
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1505
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT1G75170
| PredictedCo-purification | FSW = 0.1083
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT5G52640
| PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0126
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT5G63680
| PredictedAffinity Capture-MS | FSW = 0.0094
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
| AT5G22780
| PredictedAffinity Capture-MS | FSW = 0.0098
| Class C:plasma membrane | ADAPTIN FAMILY PROTEIN |
| AT2G47160
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0406
| Class C:plasma membrane | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
| AT4G34430
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1797
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT4G36590
| PredictedAffinity Capture-MS | FSW = 0.3589
| Class C:nucleus | MADS-BOX PROTEIN (AGL40) |
| AT1G31780
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2169
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
| AT4G01320
| Predictedsynthetic growth defect | FSW = 0.0820
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
| AT2G44350
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3475
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
| AT3G23940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3520
| Unknown | DEHYDRATASE FAMILY |
| AT2G30390
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1517
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
| AT4G15940
| PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN |
| AT5G63860
| PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT2G18230
| PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT1G02080 | Predictedtwo hybrid | FSW = 0.0651
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
| AT1G05660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3534
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
| AT1G07705
| Predictedtwo hybrid | FSW = 0.0951
| Unknown | TRANSCRIPTION REGULATOR |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2222
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G10600
| PredictedAffinity Capture-MS | FSW = 0.2469
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
| AT1G11650
| PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G17130
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0193
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT1G17145
| PredictedAffinity Capture-MS | FSW = 0.0402
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT1G27320
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1921
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
| AT1G66590
| Predictedtwo hybrid | FSW = 0.0049
| Unknown | COX19 FAMILY PROTEIN |
| AT2G34980
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2405
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
| AT2G46070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2684
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
| AT3G18660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1699
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT3G25597
| PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | UNKNOWN PROTEIN |
| AT3G27580
| PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G49470
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationtwo hybrid | FSW = 0.1153
| Unknown | NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) |
| AT4G04695
| PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G14670
| PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G01640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4372
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
| AT5G10260
| PredictedSynthetic Lethality | FSW = 0.0135
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G14050
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0341
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G25030
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4677
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
| AT5G26250
| PredictedAffinity Capture-MS | FSW = 0.1783
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G37830
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3380
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
| AT5G38890
| PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | EXORIBONUCLEASE-RELATED |
| AT5G41700
| Predictedtwo hybrid | FSW = 0.0107
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G44830
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2101
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT5G54200
| PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G56360
| PredictedAffinity Capture-MS | FSW = 0.0331
| Unknown | CALMODULIN-BINDING PROTEIN |
| AT5G59850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3404
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
| AT3G20800
| Predictedtwo hybrid | FSW = 0.1105
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
| AT3G45630
| Predictedtwo hybridAffinity Capture-Western | FSW = 0.0751
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G58560
| Predictedtwo hybrid | FSW = 0.0317
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT5G10960
| Predictedtwo hybrid | FSW = 0.0425
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
| AT5G13010
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3341
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G18230
| Predictedtwo hybridAffinity Capture-Western | FSW = 0.0843
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
| AT1G33040
| Predictedtwo hybrid | FSW = 0.0108
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0136
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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