Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G44350 - ( ATCS ATP binding / ATP citrate synthase/ citrate (SI)-synthase )
53 Proteins interacs with AT2G44350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0182
| Class C:plastidmitochondrion | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G03290 | PredictedPhenotypic Suppression | FSW = 0.0263
| Class C:plastidmitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT1G74710 | PredictedAffinity Capture-MS | FSW = 0.0677
| Class C:plastid | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0239
| Class C:plastid | PROTEIN KINASE FAMILY PROTEIN |
AT3G23940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4500
| Class C:plastid | DEHYDRATASE FAMILY |
AT5G23310 | PredictedAffinity Capture-MS | FSW = 0.0172
| Class C:plastid | FSD3 (FE SUPEROXIDE DISMUTASE 3) SUPEROXIDE DISMUTASE |
AT5G40000 | PredictedAffinity Capture-MS | FSW = 0.0919
| Class C:mitochondrion | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G53240 | Predictedin vitroin vitroAffinity Capture-MSReconstituted Complex | FSW = 0.0380
| Class C:mitochondrion | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT3G09810 | PredictedPhenotypic Suppression | FSW = 0.0269
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT3G60100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0789
| Class C:mitochondrion | CSY5 (CITRATE SYNTHASE 5) CITRATE (SI)-SYNTHASE/ TRANSFERASE TRANSFERRING ACYL GROUPS ACYL GROUPS CONVERTED INTO ALKYL ON TRANSFER |
AT2G36530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3195
| Class C:extracellular | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.0094
| Class C:extracellular | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G76040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4842
| Unknown | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G09440 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT4G36750 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G12140 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2016
| Unknown | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.1798
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT3G28715 | Predictedinteraction prediction | FSW = 0.0209
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G28710 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G31780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2221
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G73230 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3475
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT1G75170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1616
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0033
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G77210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1283
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G34430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1954
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G52250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2188
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G40290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2139
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G36590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4164
| Unknown | MADS-BOX PROTEIN (AGL40) |
AT1G44910 | Predictedtwo hybridtwo hybrid | FSW = 0.0082
| Unknown | PROTEIN BINDING |
AT5G11240 | Predictedtwo hybridtwo hybrid | FSW = 0.0345
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G02170 | PredictedSynthetic Rescue | FSW = 0.0632
| Unknown | AMC1 (METACASPASE 1) CYSTEINE-TYPE ENDOPEPTIDASE |
AT1G05660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4344
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G07340 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G10600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3034
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
AT1G12130 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2421
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G25520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0317
| Unknown | UNKNOWN PROTEIN |
AT1G27320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridCo-purification | FSW = 0.3051
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G33090 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G34980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2984
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.1678
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0669
| Unknown | HISTONE H2B PUTATIVE |
AT2G46070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3282
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G18660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2165
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G25030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5725
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
AT5G37830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4091
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT5G44830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2580
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G59850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4164
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT4G33950 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G01640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.5023
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
AT5G13010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3841
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G28470 | PredictedAffinity Capture-MS | FSW = 0.0394
| Unknown | TRANSPORTER |
AT5G64760 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454