Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G10600 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN ubiquitin-dependent protein catabolic process LOCATED IN chloroplast EXPRESSED IN cultured cell CONTAINS InterPro DOMAIN/s Mov34/MPN/PAD-1 (InterProIPR000555) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT4G161441) Has 753 Blast hits to 752 proteins in 167 species Archae - 0 Bacteria - 0 Metazoa - 359 Fungi - 199 Plants - 115 Viruses - 0 Other Eukaryotes - 80 (source NCBI BLink) )
23 Proteins interacs with AT1G10600| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G12140
   | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.7420
| Unknown | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
| AT2G34480
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3500
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT4G01320
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2943
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
| AT2G44350
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3034
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
| AT2G30390
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5320
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
| AT3G23940
| PredictedAffinity Capture-MS | FSW = 0.2768
| Unknown | DEHYDRATASE FAMILY |
| AT1G73230
| PredictedAffinity Capture-MS | FSW = 0.2469
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
| AT1G75170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-crystal Structuretwo hybridCo-purification | FSW = 0.4779
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT4G35020
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3065
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT1G77210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3862
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT4G33090
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1789
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
| AT2G40290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.2562
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G36590
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6125
| Unknown | MADS-BOX PROTEIN (AGL40) |
| AT5G47630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1989
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT1G43080
| PredictedAffinity Capture-MSAffinity Capture-MSCo-crystal StructureCo-crystal StructureAffinity Capture-MS | FSW = 0.5367
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT3G30842
| PredictedAffinity Capture-MSsynthetic growth defectAffinity Capture-MSCo-crystal Structuretwo hybridPhenotypic Enhancement | FSW = 0.1625
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G44830
| PredictedSynthetic Rescue | FSW = 0.1023
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT5G59440
| PredictedAffinity Capture-MSAffinity Capture-MSCo-crystal Structure | FSW = 0.3979
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
| AT2G46070
| PredictedAffinity Capture-MS | FSW = 0.1798
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
| AT3G26690
| Predictedtwo hybrid | FSW = 0.0404
| Unknown | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE |
| AT4G15370
| Predictedtwo hybrid | FSW = 0.0293
| Unknown | BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC |
| AT5G13010
| PredictedAffinity Capture-MS | FSW = 0.2436
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G37830
| PredictedAffinity Capture-MS | FSW = 0.1921
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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