Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35020 - ( ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP binding / GTPase )
74 Proteins interacs with AT4G35020| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G07880
   | Experimentaltwo hybrid | FSW = 0.0683
| Class D:nucleus (p = 0.78) | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
| AT2G33460
| Experimentalfluorescence acceptor donor pairAffinity Capture-Western | FSW = 0.0659
| Class D:nucleus (p = 0.78) | RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) PROTEIN BINDING |
| AT4G01190
| Experimentalpull downAffinity Capture-MS | FSW = 0.0577
| Unknown | ATPIPK10 (ARABIDOPSIS PHOSPHATIDYLINOSITOL PHOSPHATE KINASE 10) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
| AT2G42740
| PredictedPhenotypic Suppression | FSW = 0.0209
| Class C:plasma membrane | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G12140
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3307
| Class C:plasma membrane | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
| AT2G34480
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1641
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT5G56030
| PredictedSynthetic Lethality | FSW = 0.0056
| Class C:plasma membrane | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
| AT5G62880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0864
| Class C:plasma membrane | ARAC10 GTP BINDING |
| AT1G75840
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1130
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT4G00100
| PredictedPhenotypic Suppression | FSW = 0.0115
| Class C:plasma membrane | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G28950
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0722
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
| AT1G07670
| PredictedSynthetic Lethality | FSW = 0.0174
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
| AT1G75170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.1940
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT4G34580
| Predictedinterologs mapping | FSW = 0.0413
| Class C:plasma membrane | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
| AT3G03800
| Predictedinterologs mapping | FSW = 0.0635
| Class C:plasma membrane | SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR |
| AT1G20090
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2645
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
| AT5G12370
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0469
| Class C:plasma membrane | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
| AT5G45970
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0972
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT2G44690
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1279
| Class C:plasma membrane | ARAC9 GTP BINDING |
| AT4G35950
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1481
| Class C:plasma membrane | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
| AT3G09900
| PredictedSynthetic Lethalityinterologs mappingSynthetic Lethality | FSW = 0.0222
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT4G26110
| PredictedSynthetic Rescue | FSW = 0.0169
| Class C:plasma membrane | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
| AT5G19990
| PredictedPhenotypic Suppression | FSW = 0.0070
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT4G33090
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1155
| Class C:plasma membrane | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
| AT3G48040
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1876
| Class C:plasma membrane | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
| AT1G77210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1721
| Class C:plasma membrane | SUGAR TRANSPORTER PUTATIVE |
| AT4G01320
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1293
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
| AT3G53740
| PredictedPhenotypic Suppression | FSW = 0.0160
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36B) |
| AT3G19980
| PredictedSynthetic Lethality | FSW = 0.0079
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT2G30390
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2204
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
| AT3G23940
| PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | DEHYDRATASE FAMILY |
| AT2G17420
| PredictedPhenotypic Suppression | FSW = 0.0069
| Unknown | NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE |
| AT4G13980
| Predictedbiochemical | FSW = 0.0069
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G40290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1017
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G36590
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2285
| Unknown | MADS-BOX PROTEIN (AGL40) |
| AT1G08620
| Predictedtwo hybrid | FSW = 0.0462
| Unknown | TRANSCRIPTION FACTOR |
| AT3G05520
| PredictedSynthetic Lethality | FSW = 0.0279
| Unknown | F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN |
| AT2G32060
| PredictedPhenotypic Suppression | FSW = 0.0231
| Unknown | 40S RIBOSOMAL PROTEIN S12 (RPS12C) |
| AT5G47630
| PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0962
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT5G08335
| Predictedin vivo | FSW = 0.0105
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
| AT3G51300
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1258
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
| AT2G17800
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1144
| Unknown | ARAC1 GTP BINDING |
| AT5G18380
| Predictedtwo hybrid | FSW = 0.0398
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16C) |
| AT5G20570
| PredictedSynthetic Lethality | FSW = 0.0137
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
| AT4G10920
| PredictedAffinity Capture-MS | FSW = 0.0501
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
| AT1G31810
| Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0189
| Unknown | ACTIN BINDING |
| AT2G35110
| Predictedin vivoin vitro | FSW = 0.0330
| Unknown | GRL (GNARLED) TRANSCRIPTION ACTIVATOR |
| AT1G10600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3065
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
| AT1G43080
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2557
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT1G49540
| PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | NUCLEOTIDE BINDING |
| AT1G60620
| PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G71790
| PredictedSynthetic Lethality | FSW = 0.0123
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
| AT2G44270
| PredictedSynthetic Lethality | FSW = 0.0297
| Unknown | ATP BINDING |
| AT3G05870
| PredictedSynthetic Lethality | FSW = 0.0185
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT4G12460
| Predictedinterologs mapping | FSW = 0.0165
| Unknown | ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING |
| AT4G22540
| Predictedinterologs mapping | FSW = 0.0426
| Unknown | ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) OXYSTEROL BINDING / PHOSPHOINOSITIDE BINDING |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G21170 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0646
| Unknown | SEC5B |
| AT1G26450
| Predictedinterologs mapping | FSW = 0.0171
| Unknown | BETA-13-GLUCANASE-RELATED |
| AT2G47970
| PredictedAffinity Capture-MS | FSW = 0.1602
| Unknown | NPL4 FAMILY PROTEIN |
| AT3G30842
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0967
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G56640
| PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0640
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
| AT4G05320
| PredictedReconstituted Complex | FSW = 0.0142
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
| AT5G37830
| PredictedCo-purification | FSW = 0.0447
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
| AT5G59440
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1907
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
| AT5G01670
| PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | ALDOSE REDUCTASE PUTATIVE |
| AT5G03430
| PredictedSynthetic Lethality | FSW = 0.0282
| Unknown | PHOSPHOADENOSINE PHOSPHOSULFATE (PAPS) REDUCTASE FAMILY PROTEIN |
| AT5G50320
| PredictedSynthetic Lethality | FSW = 0.0228
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
| AT5G55130
| PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
| AT1G59730
| PredictedPhenotypic Suppression | FSW = 0.0225
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
| AT3G49650
| PredictedAffinity Capture-Western | FSW = 0.0083
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT3G61110
| PredictedPhenotypic Suppression | FSW = 0.0260
| Unknown | ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G27960
| PredictedPhenotypic Suppression | FSW = 0.0037
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
| AT4G20980
| Predictedinterologs mapping | FSW = 0.0109
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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