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AT3G56640 - ( exocyst complex subunit Sec15-like family protein )

76 Proteins interacs with AT3G56640

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G27490	Predicted Synthetic Lethality	FSW = 0.0184	Unknown	ATCOAE ATP BINDING / DEPHOSPHO-COA KINASE
AT1G02130	Predicted Synthetic Lethality	FSW = 0.0706	Unknown	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G12360	Predicted Synthetic Lethality interologs mapping interologs mapping Affinity Capture-Western	FSW = 0.2834	Unknown	KEU (KEULE) PROTEIN TRANSPORTER
AT5G49830	Predicted in vivo in vivo	FSW = 0.0449	Unknown	LOCATED IN PLASMA MEMBRANE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G103851) HAS 257 BLAST HITS TO 210 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 133 FUNGI - 61 PLANTS - 56 VIRUSES - 2 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK)
AT2G07050	Predicted Synthetic Lethality	FSW = 0.0225	Unknown	CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE
AT3G44110	Predicted two hybrid two hybrid	FSW = 0.0055	Unknown	ATJ3 PROTEIN BINDING
AT3G02520	Predicted Dosage Growth Defect	FSW = 0.0573	Unknown	GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G47690	Predicted Synthetic Lethality	FSW = 0.0127	Unknown	BINDING
AT5G04740	Predicted two hybrid	FSW = 0.0135	Unknown	ACT DOMAIN-CONTAINING PROTEIN
AT4G19490	Predicted two hybrid	FSW = 0.0113	Unknown	PROTEIN BINDING
AT1G73820	Predicted Synthetic Lethality	FSW = 0.0165	Unknown	SSU72-LIKE FAMILY PROTEIN
AT5G38480	Predicted Dosage Growth Defect	FSW = 0.0797	Unknown	GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G08560	Predicted interologs mapping	FSW = 0.0598	Unknown	SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR
AT1G07670	Predicted Phenotypic Suppression interologs mapping	FSW = 0.0227	Unknown	CALCIUM-TRANSPORTING ATPASE
AT4G34580	Predicted Synthetic Lethality	FSW = 0.0819	Unknown	COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G52640	Predicted two hybrid	FSW = 0.0064	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G19650	Predicted Synthetic Lethality	FSW = 0.0642	Unknown	SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE
AT3G03800	Predicted interologs mapping	FSW = 0.1004	Unknown	SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR
AT1G20090	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.0516	Unknown	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT5G12370	Predicted Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western two hybrid two hybrid Reconstituted Complex Affinity Capture-MS Affinity Capture-Western interologs mapping	FSW = 0.1485	Unknown	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT4G35020	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.0640	Unknown	ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT3G09900	Predicted two hybrid Synthetic Lethality Synthetic Lethality interologs mapping co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Synthetic Lethality two hybrid co-fractionation Co-fractionation interologs mapping Synthetic Lethality interaction prediction	FSW = 0.1755	Unknown	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G71820	Predicted Synthetic Lethality co-fractionation Co-fractionation co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Synthetic Lethality Co-fractionation co-fractionation Co-fractionation Synthetic Lethality Affinity Capture-MS	FSW = 0.1473	Unknown	SEC6
AT1G30230	Predicted Synthetic Lethality	FSW = 0.0101	Unknown	ELONGATION FACTOR 1-BETA / EF-1-BETA
AT1G20970	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1438	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT1G13120	Predicted Synthetic Lethality	FSW = 0.0127	Unknown	EMB1745 (EMBRYO DEFECTIVE 1745)
AT2G19760	Predicted Synthetic Lethality	FSW = 0.0421	Unknown	PRF1 (PROFILIN 1) ACTIN BINDING
AT5G43900	Predicted interaction prediction	FSW = 0.0310	Unknown	MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT4G07950	Predicted Synthetic Lethality	FSW = 0.0155	Unknown	DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT5G04600	Predicted Synthetic Lethality	FSW = 0.0130	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G01210	Predicted Synthetic Lethality	FSW = 0.0196	Unknown	DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT4G38130	Predicted two hybrid	FSW = 0.0048	Unknown	HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT4G31720	Predicted Synthetic Lethality	FSW = 0.0082	Unknown	TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT1G07370	Predicted Synthetic Lethality	FSW = 0.0016	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G55750	Predicted Synthetic Lethality	FSW = 0.0036	Unknown	TRANSCRIPTION FACTOR-RELATED
AT1G29330	Predicted Synthetic Lethality	FSW = 0.0058	Unknown	ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT5G20570	Predicted Synthetic Lethality	FSW = 0.0478	Unknown	RBX1 (RING-BOX 1) PROTEIN BINDING
AT1G62430	Predicted Synthetic Lethality	FSW = 0.0156	Unknown	ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE
AT3G28730	Predicted Synthetic Lethality	FSW = 0.0051	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G42830	Predicted Synthetic Lethality	FSW = 0.0232	Unknown	RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE
AT2G19770	Predicted Synthetic Lethality	FSW = 0.0729	Unknown	PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING
AT1G04160	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.0939	Unknown	XIB (MYOSIN XI B) MOTOR
AT1G21170	Predicted Affinity Capture-MS Synthetic Lethality Affinity Capture-MS Synthetic Lethality Affinity Capture-MS co-fractionation Co-fractionation	FSW = 0.2174	Unknown	SEC5B
AT1G25260	Predicted Synthetic Lethality	FSW = 0.0222	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G50030	Predicted Synthetic Lethality	FSW = 0.0149	Unknown	TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING
AT1G54390	Predicted Synthetic Lethality	FSW = 0.0251	Unknown	PHD FINGER PROTEIN-RELATED
AT1G60620	Predicted Synthetic Lethality	FSW = 0.0082	Unknown	ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G18220	Predicted Synthetic Lethality	FSW = 0.0217	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G27970	Predicted Synthetic Lethality	FSW = 0.0083	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G34980	Predicted Synthetic Lethality	FSW = 0.0214	Unknown	SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT3G01090	Predicted interologs mapping	FSW = 0.0191	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G02280	Predicted Synthetic Lethality	FSW = 0.0203	Unknown	FLAVODOXIN FAMILY PROTEIN
AT5G06140	Predicted two hybrid	FSW = 0.0072	Unknown	SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT5G09350	Predicted synthetic growth defect	FSW = 0.1918	Unknown	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G13150	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0684	Unknown	ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT4G01560	Predicted Synthetic Lethality	FSW = 0.0214	Unknown	MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G07410	Predicted Synthetic Lethality	FSW = 0.0049	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G16710	Predicted Synthetic Lethality	FSW = 0.0196	Unknown	GLYCOSYLTRANSFERASE FAMILY PROTEIN 28
AT4G18230	Predicted Synthetic Lethality	FSW = 0.0259	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S OLIGOSACCHARIDE BIOSYNTHESIS PROTEIN ALG14 LIKE (INTERPROIPR013969) HAS 453 BLAST HITS TO 453 PROTEINS IN 176 SPECIES ARCHAE - 4 BACTERIA - 199 METAZOA - 76 FUNGI - 83 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 63 (SOURCE NCBI BLINK)
AT4G24920	Predicted interologs mapping	FSW = 0.0265	Unknown	PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE
AT5G13010	Predicted Synthetic Lethality	FSW = 0.0120	Unknown	EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G37340	Predicted Synthetic Lethality	FSW = 0.0554	Unknown	ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT5G47430	Predicted Synthetic Lethality	FSW = 0.0173	Unknown	ZINC ION BINDING
AT5G54750	Predicted Synthetic Lethality	FSW = 0.0753	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT1G54090	Predicted Affinity Capture-MS	FSW = 0.1335	Unknown	ATEXO70D2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2) PROTEIN BINDING
AT1G02010	Predicted Synthetic Lethality Affinity Capture-Western interologs mapping	FSW = 0.2394	Unknown	SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER
AT1G64750	Predicted interologs mapping Synthetic Rescue	FSW = 0.0037	Unknown	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT2G27960	Predicted Synthetic Lethality	FSW = 0.0069	Unknown	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT1G33390	Predicted Synthetic Lethality	FSW = 0.0255	Unknown	HELICASE DOMAIN-CONTAINING PROTEIN
AT1G66960	Predicted Synthetic Lethality	FSW = 0.0214	Unknown	LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE
AT4G17410	Predicted Synthetic Lethality	FSW = 0.0237	Unknown	ZINC ION BINDING
AT1G77600	Predicted Synthetic Lethality	FSW = 0.0225	Unknown	BINDING
AT1G27470	Predicted Synthetic Lethality	FSW = 0.0167	Unknown	TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED
AT5G17270	Predicted Synthetic Lethality	FSW = 0.0137	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G22480	Predicted Synthetic Lethality	FSW = 0.0369	Unknown	ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN
AT5G45010	Predicted interaction prediction	FSW = 0.0081	Unknown	ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G56640 - ( exocyst complex subunit Sec15-like family protein )

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