Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G19760 - ( PRF1 (PROFILIN 1) actin binding )
23 Proteins interacs with AT2G19760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | Predictedtwo hybridtwo hybridtwo hybridPhenotypic SuppressionReconstituted ComplexSynthetic LethalitySynthetic RescueEnriched domain pairCo-expression | FSW = 0.0431
| Class C:plasma membrane | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G29350 | PredictedShared biological functionGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2286
| Class C:plasma membrane | PFN2 (PROFILIN 2) ACTIN BINDING / PROTEIN BINDING |
AT1G11680 | PredictedSynthetic Lethality | FSW = 0.0163
| Class C:plasma membrane | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT4G04910 | PredictedSynthetic Lethality | FSW = 0.0297
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G22110 | Predictedinterologs mapping | FSW = 0.0121
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G18870 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT4G12590 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | UNKNOWN PROTEIN |
AT1G13980 | Predictedinterologs mapping | FSW = 0.0308
| Unknown | GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION |
AT2G19770 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3841
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
AT4G29340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2857
| Unknown | PRF4 (PROFILIN 4) ACTIN BINDING |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0065
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G67290 | PredictedSynthetic Rescue | FSW = 0.0362
| Unknown | FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN |
ATCG00905 | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT4G34490 | Predictedinterologs mappingtwo hybrid | FSW = 0.0602
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.1143
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0421
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT3G27000 | PredictedSynthetic LethalityEnriched domain pairCo-expression | FSW = 0.0206
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.0672
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT1G01960 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G31810 | Predictedtwo hybridtwo hybrid | FSW = 0.1111
| Unknown | ACTIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454