Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G19760 - ( PRF1 (PROFILIN 1) actin binding )

23 Proteins interacs with AT2G19760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G49240

Predicted

two hybrid

two hybrid

two hybrid

Phenotypic Suppression

Reconstituted Complex

Synthetic Lethality

Synthetic Rescue

Enriched domain pair

Co-expression

FSW = 0.0431

Class C:

plasma membrane

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G29350

Predicted

Shared biological function

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.2286

Class C:

plasma membrane

PFN2 (PROFILIN 2) ACTIN BINDING / PROTEIN BINDING
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0163

Class C:

plasma membrane

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT4G04910

Predicted

Synthetic Lethality

FSW = 0.0297

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G22110

Predicted

interologs mapping

FSW = 0.0121

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0120

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G18870

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT4G12590

Predicted

Phenotypic Enhancement

FSW = 0.0667

Unknown

UNKNOWN PROTEIN
AT1G13980

Predicted

interologs mapping

FSW = 0.0308

Unknown

GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT2G19770

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3841

Unknown

PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING
AT4G29340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2857

Unknown

PRF4 (PROFILIN 4) ACTIN BINDING
AT1G25510

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT4G21490

Predicted

Affinity Capture-MS

FSW = 0.0051

Unknown

NDB3 NADH DEHYDROGENASE
AT5G66640

Predicted

biochemical

FSW = 0.0065

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT5G67290

Predicted

Synthetic Rescue

FSW = 0.0362

Unknown

FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN
ATCG00905Predicted

Affinity Capture-MS

FSW = 0.0268

Unknown

CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT
AT4G34490

Predicted

interologs mapping

two hybrid

FSW = 0.0602

Unknown

ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING
AT5G09350

Predicted

Synthetic Lethality

FSW = 0.1143

Unknown

PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT3G56640

Predicted

Synthetic Lethality

FSW = 0.0421

Unknown

EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT3G27000

Predicted

Synthetic Lethality

Enriched domain pair

Co-expression

FSW = 0.0206

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G02010

Predicted

Synthetic Lethality

FSW = 0.0672

Unknown

SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER
AT1G01960

Predicted

Synthetic Lethality

FSW = 0.0188

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT1G31810

Predicted

two hybrid

two hybrid

FSW = 0.1111

Unknown

ACTIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454