Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14800 - ( PBD2 (20S PROTEASOME BETA SUBUNIT 2) peptidase/ threonine-type endopeptidase )
107 Proteins interacs with AT4G14800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.2424
| Class D:cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G21720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2083
| Class C:vacuole | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.0186
| Class C:vacuole | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0134
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.0152
| Class C:vacuole | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3743
| Class C:vacuole | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0266
| Class C:vacuole | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.0235
| Class C:vacuole | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G22630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4634
| Class C:vacuole | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2273
| Class C:vacuole | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.2724
| Class C:vacuole | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectAffinity Capture-MSinteraction prediction | FSW = 0.3203
| Class C:vacuole | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G24770 | PredictedSynthetic Lethality | FSW = 0.0883
| Class C:vacuole | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1348
| Class C:vacuole | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G07090 | PredictedAffinity Capture-MS | FSW = 0.0026
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT5G35590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2937
| Class C:vacuole | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0024
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G19980 | PredictedSynthetic Lethality | FSW = 0.0136
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G07890 | PredictedSynthetic Lethality | FSW = 0.0340
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT3G60820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2154
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G02520 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G47690 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | BINDING |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT1G71440 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | PFI (PFIFFERLING) |
AT2G31810 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT5G54810 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1) TRYPTOPHAN SYNTHASE |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0377
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G38480 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G60390 | PredictedAffinity Capture-Western | FSW = 0.0236
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G48750 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0204
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT1G02500 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G48930 | PredictedAffinity Capture-MS | FSW = 0.0029
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G36160 | PredictedAffinity Capture-MS | FSW = 0.0402
| Unknown | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE |
AT1G56330 | Predictedinterologs mapping | FSW = 0.0130
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT3G56760 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT1G04810 | Predictedinteraction prediction | FSW = 0.2861
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2483
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.3184
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1270
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G19990 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.2552
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3831
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20140 | Predictedinteraction prediction | FSW = 0.2485
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT2G19760 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | PRF1 (PROFILIN 1) ACTIN BINDING |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2919
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3143
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | Predictedinteraction prediction | FSW = 0.2764
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT3G05530 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2919
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G18130 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT2G06210 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0014
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT1G48920 | Predictedinterologs mapping | FSW = 0.0163
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | HISTONE H2B PUTATIVE |
AT1G10060 | PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT5G26780 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
AT5G66590 | PredictedSynthetic Lethality | FSW = 0.0371
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G38470 | PredictedAffinity Capture-Western | FSW = 0.1306
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G13060 | Predictedtwo hybridAffinity Capture-MSPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementSynthetic Rescuesynthetic growth defectCo-purificationinteraction prediction | FSW = 0.2540
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | Predictedin vivoin vitro | FSW = 0.2647
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | Predictedinteraction predictionCo-expression | FSW = 0.1168
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2634
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G03340 | PredictedAffinity Capture-MS | FSW = 0.0328
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT1G16190 | Predictedinteraction prediction | FSW = 0.1156
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT4G10330 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | GLYCINE-RICH PROTEIN |
AT1G15440 | PredictedSynthetic Lethality | FSW = 0.0214
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G29150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2087
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G51710 | PredictedAffinity Capture-MS | FSW = 0.1881
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G56450 | PredictedAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementtwo hybridAffinity Capture-MSPhenotypic Enhancementsynthetic growth defectinteraction prediction | FSW = 0.2727
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G61040 | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2974
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G75430 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | BLH11 (BEL1-LIKE HOMEODOMAIN 11) TRANSCRIPTION FACTOR |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1773
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT1G79730 | PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G02760 | PredictedAffinity Capture-Western | FSW = 0.0441
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G03430 | PredictedAffinity Capture-MS | FSW = 0.2564
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G32730 | PredictedAffinity Capture-MS | FSW = 0.3181
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G11270 | PredictedAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.2931
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G13330 | PredictedAffinity Capture-MS | FSW = 0.1516
| Unknown | BINDING |
AT3G14100 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
AT3G15470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0328
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G18370 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethalitytwo hybridAffinity Capture-MSinterologs mappingSynthetic Lethality | FSW = 0.1154
| Unknown | ATSYTF |
AT2G17980 | PredictedPhenotypic SuppressionSynthetic Lethality | FSW = 0.0095
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G38630 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-Westerninteraction prediction | FSW = 0.2207
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2851
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G24840 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridSynthetic Lethalitysynthetic growth defectbiochemicalCo-purificationco-fractionationCo-fractionation | FSW = 0.0323
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G19006 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3106
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G25120 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G29040 | PredictedAffinity Capture-MS | FSW = 0.2724
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G32530 | Predictedinterologs mapping | FSW = 0.0173
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.0049
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G23540 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2759
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G40580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2392
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G41080 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN |
AT5G41700 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.0191
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | PredictedAffinity Capture-Western | FSW = 0.0117
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G43010 | PredictedAffinity Capture-MS | FSW = 0.2880
| Unknown | RPT4A ATPASE |
AT5G50870 | PredictedAffinity Capture-Western | FSW = 0.0402
| Unknown | UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE |
AT5G58410 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G61150 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454