Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43010 - ( RPT4A ATPase )
47 Proteins interacs with AT5G43010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66140 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | Predictedtwo hybrid | FSW = 0.1714
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.2880
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G58500 | Predictedtwo hybrid | FSW = 0.0460
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0221
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0403
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G45000 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6501
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4391
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT2G20580 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.3012
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G10430 | Predictedtwo hybridtwo hybrid | FSW = 0.0404
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionPhylogenetic profile method | FSW = 0.3814
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | Predictedinteraction predictionAffinity Capture-MStwo hybridco-fractionationCo-fractionationAffinity Capture-MSinteraction predictionGene neighbors methodPhylogenetic profile method | FSW = 0.3273
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT5G42790 | PredictedAffinity Capture-MS | FSW = 0.3551
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20140 | PredictedPhylogenetic profile method | FSW = 0.4585
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5223
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedPhylogenetic profile method | FSW = 0.5436
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | Predictedinteraction predictiontwo hybridtwo hybridAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6238
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT4G10710 | PredictedAffinity Capture-Western | FSW = 0.0162
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT1G16470 | Predictedtwo hybrid | FSW = 0.2108
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G40820 | Predictedinterologs mapping | FSW = 0.0060
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G58290 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridCo-purificationco-fractionationCo-fractionationinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4634
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G38470 | PredictedPhenotypic EnhancementAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.2262
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G56590 | Predictedtwo hybrid | FSW = 0.0415
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT5G57950 | Predictedtwo hybridtwo hybrid | FSW = 0.1320
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5032
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.1133
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4965
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT5G02880 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0555
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT1G10520 | PredictedAffinity Capture-MS | FSW = 0.2930
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT1G15420 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0235
| Unknown | UNKNOWN PROTEIN |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3020
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2719
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G57620 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4369
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G80410 | PredictedAffinity Capture-MS | FSW = 0.0555
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G03430 | PredictedAffinity Capture-MS | FSW = 0.4191
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G16950 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0074
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4685
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G27000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0313
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G29040 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.6237
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1690
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4181
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G23540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4469
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G03760 | Predictedin vivo | FSW = 0.0356
| Unknown | PREFOLDIN SUBUNIT FAMILY PROTEIN |
AT5G22840 | Predictedinteraction prediction | FSW = 0.0392
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G20000 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.2131
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT1G53780 | PredictedPhylogenetic profile method | FSW = 0.3242
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454