Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G03430 - ( ankyrin repeat family protein )
39 Proteins interacs with AT2G03430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.2589
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.2564
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4163
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3980
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G04810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4986
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3035
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3502
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2990
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.5061
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4901
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4253
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0121
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT3G57230 | PredictedGene fusion method | FSW = 0.0322
| Unknown | AGL16 (AGAMOUS-LIKE 16) TRANSCRIPTION FACTOR |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0189
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT5G57440 | PredictedGene fusion method | FSW = 0.0762
| Unknown | GS1 CATALYTIC/ HYDROLASE |
AT3G54300 | PredictedGene fusion method | FSW = 0.0109
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G22540 | PredictedGene fusion method | FSW = 0.0254
| Unknown | SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING |
AT5G58290 | Predictedinteraction predictiontwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-crystal StructureAffinity Capture-MSCo-crystal Structure | FSW = 0.3885
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G62480 | PredictedGene fusion method | FSW = 0.0544
| Unknown | ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) GLUTATHIONE TRANSFERASE |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3205
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G51710 | PredictedAffinity Capture-MS | FSW = 0.2728
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0247
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G64520 | PredictedAffinity Capture-MS | FSW = 0.4421
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3961
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5121
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G29040 | PredictedAffinity Capture-MS | FSW = 0.4449
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1687
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4227
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G23540 | PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4579
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT5G43010 | PredictedAffinity Capture-MS | FSW = 0.4191
| Unknown | RPT4A ATPASE |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.3653
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT1G65660 | Predictedinteraction predictiontwo hybrid | FSW = 0.0119
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT2G28315 | PredictedGene fusion method | FSW = 0.0952
| Unknown | LOCATED IN MEMBRANE CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF250 (INTERPROIPR004853) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSPORTER-RELATED (TAIRAT1G068902) HAS 1852 BLAST HITS TO 1847 PROTEINS IN 207 SPECIES ARCHAE - 0 BACTERIA - 58 METAZOA - 582 FUNGI - 250 PLANTS - 685 VIRUSES - 0 OTHER EUKARYOTES - 277 (SOURCE NCBI BLINK) |
AT3G16565 | PredictedGene fusion method | FSW = 0.0190
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G03205 | PredictedGene fusion method | FSW = 0.0952
| Unknown | COPROPORPHYRINOGEN III OXIDASE PUTATIVE / COPROPORPHYRINOGENASE PUTATIVE / COPROGEN OXIDASE PUTATIVE |
AT1G29550 | PredictedGene fusion method | FSW = 0.0100
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT5G16140 | PredictedGene fusion method | FSW = 0.0317
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT1G51280 | PredictedGene fusion method | FSW = 0.0211
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454