Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16565 - ( ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding )
17 Proteins interacs with AT3G16565Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | Predictedsynthetic growth defect | FSW = 0.0154
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT1G02780 | Predictedinterologs mapping | FSW = 0.0286
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G28860 | PredictedAffinity Capture-MS | FSW = 0.0630
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G52250 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G19980 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complexinterologs mapping | FSW = 0.0334
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G03160 | Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Westernsynthetic growth defect | FSW = 0.0178
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0612
| Unknown | UNKNOWN PROTEIN |
AT2G43190 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT4G35520 | PredictedAffinity Capture-MS | FSW = 0.0831
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT5G13240 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | TRANSCRIPTION REGULATOR |
AT5G66640 | Predictedbiochemical | FSW = 0.0303
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G61050 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0426
| Unknown | HISTONE DEACETYLASE-RELATED / HD-RELATED |
AT2G03430 | PredictedGene fusion method | FSW = 0.0190
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454