Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G03160 - ( ASK19 (ARABIDOPSIS SKP1-LIKE 19) protein binding / ubiquitin-protein ligase )
42 Proteins interacs with AT2G03160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G12360 | Experimental | FSW = 0.0401
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT4G33430 | Experimental | FSW = 0.2010
| Unknown | BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE |
AT5G57360 | Experimentaltwo hybrid | FSW = 0.3355
| Unknown | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G51870 | Experimental | FSW = 0.0296
| Unknown | AGL71 (AGAMOUS-LIKE 71) TRANSCRIPTION FACTOR |
AT5G51860 | Experimental | FSW = 0.0508
| Unknown | MADS-BOX PROTEIN (AGL72) |
AT4G11250 | Experimental | FSW = 0.0522
| Unknown | AGL52 TRANSCRIPTION FACTOR |
AT1G60880 | Experimental | FSW = 0.0783
| Unknown | AGL56 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G18750 | Experimental | FSW = 0.0274
| Unknown | AGL65 (AGAMOUS-LIKE 65) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G30950 | Experimentaltwo hybrid | FSW = 0.3439
| Unknown | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G02570 | Experimentaltwo hybrid | FSW = 0.1768
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT5G52120 | Experimentaltwo hybrid | FSW = 0.2450
| Unknown | ATPP2-A14 (PHLOEM PROTEIN 2-A14) CARBOHYDRATE BINDING |
AT4G08980 | Experimentaltwo hybrid | FSW = 0.1782
| Unknown | F-BOX FAMILY PROTEIN (FBW2) |
AT1G76920 | Experimentaltwo hybrid | FSW = 0.0812
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G27340 | Experimentaltwo hybrid | FSW = 0.2227
| Unknown | F-BOX FAMILY PROTEIN |
AT4G02740 | Experimentaltwo hybrid | FSW = 0.3231
| Unknown | CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G027602) HAS 1691 BLAST HITS TO 1200 PROTEINS IN 170 SPECIES ARCHAE - 2 BACTERIA - 109 METAZOA - 687 FUNGI - 197 PLANTS - 199 VIRUSES - 23 OTHER EUKARYOTES - 474 (SOURCE NCBI BLINK) |
AT4G12560 | Experimentaltwo hybrid | FSW = 0.4189
| Unknown | F-BOX FAMILY PROTEIN |
AT1G23190 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0324
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT1G75950 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2740
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G10080 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0463
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT3G16180 | Predictedtwo hybrid | FSW = 0.0217
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G47100 | Predictedinterologs mapping | FSW = 0.0077
| Unknown | CBL9 CALCIUM ION BINDING |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G20140 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3546
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60020 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5070
| Unknown | ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G53530 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT1G05660 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT2G47090 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G16565 | Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Westernsynthetic growth defect | FSW = 0.0178
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G20000 | Predictedinterologs mapping | FSW = 0.0186
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT3G60010 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4728
| Unknown | ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G20160 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6349
| Unknown | MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03170 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6424
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1893
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21850 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6937
| Unknown | ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G10230 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6078
| Unknown | ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21830 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5902
| Unknown | ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G25650 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6410
| Unknown | ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03190 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5823
| Unknown | ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21860 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5972
| Unknown | ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34470 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.5957
| Unknown | ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G25700 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4792
| Unknown | ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34210 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.5024
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454