Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G47090 - ( nucleic acid binding / protein binding / zinc ion binding )

88 Proteins interacs with AT2G47090
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0679

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT5G63400

Predicted

biochemical

FSW = 0.0313

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT4G27090

Predicted

Synthetic Lethality

FSW = 0.0463

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT3G57990

Predicted

Synthetic Lethality

FSW = 0.0454

Unknown

UNKNOWN PROTEIN
AT3G44300

Predicted

Synthetic Lethality

FSW = 0.0229

Unknown

NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT3G62870

Predicted

Affinity Capture-Western

two hybrid

two hybrid

FSW = 0.0690

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G07100

Predicted

Synthetic Lethality

FSW = 0.0083

Unknown

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT4G33650

Predicted

Synthetic Lethality

FSW = 0.0440

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT3G20550

Predicted

Synthetic Lethality

interologs mapping

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.0310

Unknown

DDL (DAWDLE)
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0385

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT3G62030

Predicted

interologs mapping

interologs mapping

FSW = 0.0918

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4)
AT2G39290

Predicted

Phenotypic Enhancement

Synthetic Lethality

interologs mapping

FSW = 0.0217

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT5G42130

Predicted

Synthetic Lethality

FSW = 0.0532

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G69740

Predicted

Affinity Capture-MS

FSW = 0.0265

Unknown

HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT3G44610

Predicted

Synthetic Lethality

FSW = 0.0211

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G19660

Predicted

Synthetic Lethality

FSW = 0.0523

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT5G51820

Predicted

Synthetic Lethality

FSW = 0.0659

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT4G26500

Predicted

two hybrid

FSW = 0.0386

Unknown

CPSUFE (CHLOROPLAST SULFUR E) ENZYME ACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G10070

Predicted

Synthetic Lethality

Synthetic Lethality

biochemical

FSW = 0.0283

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G26160

Predicted

Synthetic Lethality

FSW = 0.0181

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT3G17430

Predicted

Synthetic Lethality

FSW = 0.0114

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT1G15170

Predicted

synthetic growth defect

FSW = 0.0591

Unknown

MATE EFFLUX FAMILY PROTEIN
AT2G45710

Predicted

Synthetic Lethality

FSW = 0.0729

Unknown

40S RIBOSOMAL PROTEIN S27 (RPS27A)
AT4G32410

Predicted

Synthetic Lethality

FSW = 0.0119

Unknown

CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G04050

Predicted

Synthetic Lethality

FSW = 0.0217

Unknown

PYRUVATE KINASE PUTATIVE
AT4G36640

Predicted

Synthetic Rescue

FSW = 0.0100

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G53890

Predicted

Affinity Capture-MS

FSW = 0.0304

Unknown

40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT5G63680

Predicted

interologs mapping

FSW = 0.0172

Unknown

PYRUVATE KINASE PUTATIVE
AT4G35950

Predicted

interologs mapping

FSW = 0.0130

Unknown

ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING
AT4G02050

Predicted

Affinity Capture-MS

FSW = 0.0280

Unknown

SUGAR TRANSPORTER PUTATIVE
AT4G24400

Predicted

Synthetic Lethality

FSW = 0.0114

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT1G68100

Predicted

Synthetic Lethality

FSW = 0.0435

Unknown

IAR1 (IAA-ALANINE RESISTANT 1) METAL ION TRANSMEMBRANE TRANSPORTER
AT4G19690

Predicted

interologs mapping

co-fractionation

Co-fractionation

FSW = 0.1269

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT4G11380

Predicted

synthetic growth defect

FSW = 0.0205

Unknown

BETA-ADAPTIN PUTATIVE
AT1G80050

Predicted

Synthetic Lethality

FSW = 0.0539

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT5G02490

Predicted

interologs mapping

FSW = 0.0321

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT3G13460

Predicted

Synthetic Rescue

FSW = 0.0328

Unknown

ECT2 PROTEIN BINDING
AT4G28860

Predicted

Synthetic Rescue

FSW = 0.0367

Unknown

CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0534

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G03870

Predicted

two hybrid

Affinity Capture-MS

biochemical

two hybrid

Affinity Capture-Western

FSW = 0.0334

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76300

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0840

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT5G45400

Predicted

Synthetic Lethality

FSW = 0.0088

Unknown

REPLICATION PROTEIN PUTATIVE
AT2G15430

Predicted

Synthetic Lethality

FSW = 0.0193

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G25210

Predicted

Synthetic Rescue

two hybrid

Affinity Capture-Western

biochemical

FSW = 0.1684

Unknown

TRANSCRIPTION REGULATOR
AT4G30330

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G41380

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0663

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT5G47630

Predicted

Synthetic Lethality

FSW = 0.0364

Unknown

MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT2G20510

Predicted

Synthetic Lethality

FSW = 0.0378

Unknown

ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT2G14610

Predicted

Synthetic Lethality

FSW = 0.0735

Unknown

PR1 (PATHOGENESIS-RELATED GENE 1)
AT3G51860

Predicted

two hybrid

FSW = 0.0386

Unknown

CAX3 (CATION EXCHANGER 3) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER/ CATIONCATION ANTIPORTER
AT1G07780

Predicted

interologs mapping

FSW = 0.0463

Unknown

PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE
AT2G29540

Predicted

Synthetic Lethality

FSW = 0.0585

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G02100

Predicted

Affinity Capture-MS

FSW = 0.0559

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G12880

Predicted

Synthetic Lethality

FSW = 0.0176

Unknown

ATNUDT12 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 12) HYDROLASE
AT1G15440

Predicted

Synthetic Lethality

Synthetic Lethality

interologs mapping

Synthetic Lethality

FSW = 0.0633

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G22240

Predicted

Affinity Capture-MS

FSW = 0.0034

Unknown

APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G27320

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G50370

Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT2G03160

Predicted

Affinity Capture-MS

FSW = 0.0146

Unknown

ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G31260

Predicted

Synthetic Lethality

FSW = 0.1154

Unknown

APG9 (AUTOPHAGY 9)
AT2G32765

Predicted

Affinity Capture-MS

FSW = 0.0202

Unknown

SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT2G35390

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0326

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G40010

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT1G25155Predicted

synthetic growth defect

FSW = 0.0417

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G26320

Predicted

Synthetic Lethality

FSW = 0.0306

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G59960

Predicted

biochemical

Affinity Capture-MS

two hybrid

biochemical

FSW = 0.0196

Unknown

ALDO/KETO REDUCTASE PUTATIVE
AT3G04710

Predicted

Synthetic Lethality

FSW = 0.0493

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G59540Predicted

Synthetic Lethality

FSW = 0.0830

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G62770

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0768

Unknown

ATATG18A
AT4G01860

Predicted

biochemical

Reconstituted Complex

biochemical

FSW = 0.0406

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G21490

Predicted

Synthetic Lethality

FSW = 0.0258

Unknown

NDB3 NADH DEHYDROGENASE
AT4G25950

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0525

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G30540

Predicted

Synthetic Lethality

interologs mapping

Synthetic Lethality

FSW = 0.0237

Unknown

GLUTAMINE AMIDOTRANSFERASE CLASS-I DOMAIN-CONTAINING PROTEIN
AT4G37840

Predicted

Synthetic Lethality

Phenotypic Suppression

FSW = 0.0238

Unknown

HKL3 (HEXOKINASE-LIKE 3) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT5G19300

Predicted

Synthetic Lethality

FSW = 0.0119

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G20000

Predicted

biochemical

biochemical

Affinity Capture-MS

two hybrid

Affinity Capture-Western

biochemical

interologs mapping

FSW = 0.0242

Unknown

26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT3G27580

Predicted

Affinity Capture-MS

FSW = 0.0389

Unknown

ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G51110

Predicted

Synthetic Lethality

FSW = 0.0115

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G63280

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G04885

Predicted

two hybrid

interologs mapping

Synthetic Lethality

FSW = 0.0191

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT4G32180

Predicted

two hybrid

FSW = 0.0591

Unknown

ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE
AT4G32850

Predicted

Synthetic Lethality

FSW = 0.0226

Unknown

NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT4G37490

Predicted

Synthetic Lethality

FSW = 0.0145

Unknown

CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G04510

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE
AT5G24410

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G24840

Predicted

Synthetic Lethality

FSW = 0.0518

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G45020

Predicted

Phenotypic Enhancement

FSW = 0.0409

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK)
AT5G64760

Predicted

Phenotypic Suppression

FSW = 0.0254

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454