Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G41380 - ( embryo-abundant protein-related )
61 Proteins interacs with AT2G41380Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0563
| Class C:mitochondrion | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0336
| Class C:mitochondrion | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT3G55400 | PredictedSynthetic Lethality | FSW = 0.0369
| Class C:mitochondrion | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G20510 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0815
| Class C:mitochondrion | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT3G49920 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0364
| Class C:mitochondrion | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT4G36750 | PredictedSynthetic Lethality | FSW = 0.0282
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0402
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G04050 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0305
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G47510 | PredictedAffinity Capture-Western | FSW = 0.0529
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G33090 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0300
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT5G22770 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0154
| Unknown | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G38290 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0147
| Unknown | ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER |
AT5G45380 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0190
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT2G18510 | Predictedtwo hybrid | FSW = 0.0048
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G09800 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0170
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G20140 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G27670 | PredictedSynthetic Lethality | FSW = 0.0462
| Unknown | HTA7 (HISTONE H2A 7) DNA BINDING |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | SGP2 GTP BINDING |
AT3G13445 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0312
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT5G66590 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MS | FSW = 0.0618
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G30800 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0139
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT3G03950 | Predictedinterologs mapping | FSW = 0.0346
| Unknown | PROTEIN BINDING |
AT4G17190 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0358
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G01140 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0139
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G12340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0142
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G15440 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0456
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20693 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0819
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G23460 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0580
| Unknown | POLYGALACTURONASE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | UNKNOWN PROTEIN |
AT1G25500 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0814
| Unknown | CHOLINE TRANSPORTER-RELATED |
AT1G34340 | PredictedAffinity Capture-WesternCo-purificationAffinity Capture-MSReconstituted Complex | FSW = 0.0389
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G34580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0305
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G34760 | Predictedinterologs mapping | FSW = 0.0213
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G61670 | PredictedSynthetic Lethality | FSW = 0.0257
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G74440 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0791
| Unknown | UNKNOWN PROTEIN |
AT1G79210 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MS | FSW = 0.0174
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G30650 | Predictedinterologs mapping | FSW = 0.0158
| Unknown | CATALYTIC |
AT2G31260 | PredictedSynthetic Lethality | FSW = 0.0786
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G37420 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G41340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0173
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G77720 | Predictedbiochemical | FSW = 0.0066
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G47090 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0663
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0582
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G62770 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0341
| Unknown | ATATG18A |
AT5G09290 | PredictedPhenotypic Suppression | FSW = 0.0222
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT5G60340 | PredictedSynthetic Rescue | FSW = 0.0324
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT3G11270 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0089
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G23570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0187
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G44190 | PredictedAffinity Capture-Western | FSW = 0.0125
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT3G45590 | PredictedAffinity Capture-Western | FSW = 0.0313
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT4G24710 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0158
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G25150 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0303
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G16980 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0348
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G49970 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0467
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT4G22530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0692
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G10830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0359
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G61210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0313
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454