Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30650 - ( catalytic )
31 Proteins interacs with AT2G30650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G37270 | Predictedinterologs mapping | FSW = 0.0873
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34620 | PredictedAffinity Capture-MS | FSW = 0.1391
| Unknown | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G74970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2956
| Unknown | RPS9 (RIBOSOMAL PROTEIN S9) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G80190 | PredictedPhenotypic Enhancement | FSW = 0.0121
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G58800 | PredictedReconstituted Complex | FSW = 0.1256
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G65940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2470
| Unknown | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE |
AT2G34450 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0853
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT2G41380 | Predictedinterologs mapping | FSW = 0.0158
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G31810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4000
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G60510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2286
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G03600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1455
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G14580 | Predictedinterologs mapping | FSW = 0.0356
| Unknown | ATPRB1 |
AT1G01020 | PredictedCo-purification | FSW = 0.0780
| Unknown | ARV1 |
AT5G63960 | PredictedSynthetic LethalityPhenotypic Enhancementinterologs mappingsynthetic growth defect | FSW = 0.2294
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G59720 | Predictedinterologs mapping | FSW = 0.1126
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT1G65660 | PredictedSynthetic Rescue | FSW = 0.0312
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT1G34340 | Predictedinterologs mapping | FSW = 0.1902
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G49520 | PredictedCo-purification | FSW = 0.0565
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G55810 | Predictedinterologs mapping | FSW = 0.1026
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G59580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0667
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G46280 | PredictedReconstituted Complextwo hybrid | FSW = 0.0853
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G60245 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0965
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
AT4G38330 | Predictedinterologs mapping | FSW = 0.0808
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT2G36930 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G49400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1689
| Unknown | EMB1129 (EMBRYO DEFECTIVE 1129) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G15810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2393
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
AT1G64600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1621
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
AT2G30660 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5326
| Unknown | 3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE |
AT1G06550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1778
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT4G13360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4000
| Unknown | CATALYTIC |
AT3G24360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454